Aquicella siphonis: AQUSIP_04390
Help
Entry
AQUSIP_04390 CDS
T06267
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
asip
Aquicella siphonis
Pathway
asip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AQUSIP_04390 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asip03021
]
AQUSIP_04390 (rpoB)
03400 DNA repair and recombination proteins [BR:
asip03400
]
AQUSIP_04390 (rpoB)
Enzymes [BR:
asip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AQUSIP_04390 (rpoB)
Transcription machinery [BR:
asip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AQUSIP_04390 (rpoB)
DNA repair and recombination proteins [BR:
asip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AQUSIP_04390 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
VVC75152
UniProt:
A0A5E4PF65
LinkDB
All DBs
Position
1:462621..466697
Genome browser
AA seq
1358 aa
AA seq
DB search
MGSTYSYTEKKRIRKNFGKLLSAIEVPSLLAIQMDSYRKFLEANGESDKLGSSGLHGVFS
SVFPISSLSGYAALEYVSYRLGEPIFDVKECKMRGLTYAAPLRVKLRLVHYDREAEAGTQ
VVKDVKEQEVYMGEVPLMTEHGTFVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKLLF
SARVIPYRGSWLDFEFDPKDSIHARIDRRRKLPVTILLRALGMSVEEILATFFENNVYDI
ENGKFVLHLVSERLRGEIASFEVKKAGKVIIEKGRRITARHIGQLEKAGIKHLEVPSDYL
LGKVLAKTVINPETGEVIGNANDIVTGDMLKQLAGSGVKRIETLYINDIDRGPYISDTLR
VDSTTNAQEALVEIYRMMRPGEPPTKEAADALFKNLFFTPERYDLSDVGRMKLNRRVGRS
EITGPGVLSKDDIIDVLKTLIRIRNGEDVVDDIDHLGNRRVRCVGEMTENQFRIGLVRVE
RAVKERLSLPDIEAVMPQDIINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSA
LGPGGLSRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYR
KVVNNKVTDEVVYLSAIEEGDYVIAQANASVDDKRRLTDTLVPVRHRNEFTFSTPDRVQF
MDVSPKQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLKTEKPLVGTGIEHLVAKDS
GVTVVAKRGGIVDYVDASRIVVRVNEDEAEPGSTGVDIYGLTKYTRTNQDTCINQRPLVA
IGDVIAKQDVLADGQSTDTGELALGQNLLVAFMPWNGYNFEDSILISERVVQEDRFTSIH
IEELTCVARDTKLGPEEITGDIPNVSESALSKLDECGIVYIGAEVNSGDILVGKVTPKGE
TQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMEGTVIDVQVFTREGVKKDSRVQEIEKNE
LAKAKQDLSDEMRIKENDVFSRVEKLLLNRTAEGGPNKLKKGSKITKAYLGELAREKWFE
IHLKDTAASKQLESAAKQIKKIRLDFEKAYEAKRQKITQSDDLAPGVLKIVKVYLAVKRR
VQPGDKMAGRHGNKGVISMIVPVEDMPYLADGTPVDIVLNPLGVPSRMNVGQVLETHLGW
ASKELGRKVSQMLDAQQSVRNLRHFLNQIYSVGKTKESLTSLNDDEVLTLANNLRAGVPF
GTPVFDGASEEEIKTMLQLAGLPETGQAILHDGRTGVAFDRPVTVGYMYMMKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRT
KMYKNIVDSEHYMESNMPEAFNVLIKEIRSLAINIEFD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaacctactcatatactgagaaaaagcggattcgtaaaaatttcggcaaactt
ctaagtgctattgaagtgccttcattgcttgcgatccagatggattcataccgcaagttt
ctagaagctaacggcgaatcagacaaactcggctctagcggcttgcatggcgtgttttcg
tcagtctttcctatcagcagtttatcaggatacgcagctttagaatatgtgagttacagg
ctgggtgaacctatttttgatgtaaaagaatgtaaaatgcgcggtttgacttatgccgcg
ccattgcgtgttaagctgcgtctggtccattatgaccgcgaagctgaagctggtacgcaa
gtcgtcaaggatgtaaaggaacaggaagtctacatgggtgaagtcccgctcatgacagaa
cacgggacatttgttatcaatggcactgagcgtgtagtggtttcccagttgcaccgctca
ccaggcgtcttttttgaacatgacaagggcaagacacattcatccggcaaacttttgttt
tctgcgcgtgttattccttaccgtgggtcctggttggattttgaattcgacccgaaagac
agcatacatgcgcgtatagaccgccgccgcaaactcccggtcacgattttgctgcgcgcc
ctgggcatgtctgttgaagaaattctggccaccttcttcgaaaacaatgtctatgatatt
gaaaacgggaagtttgttctgcaccttgtttctgaacggctgcgcggtgaaattgcttcc
tttgaagtcaaaaaagccggcaaggtcatcatagagaaggggcgccgcattacagcgcgt
catattggacagcttgaaaaggcaggcatcaaacatcttgaagttccatccgattatctc
ttgggaaaggtactggccaagacagtcattaatcctgaaacaggcgaagtgataggcaat
gccaatgatatcgtcaccggtgatatgttaaagcagctggcaggatctggtgtcaagcgt
attgaaaccctgtatatcaatgatatcgatcgcggaccttatatttcagatactttgcgc
gtcgattcaacaacaaatgcacaggaagctctggttgaaatttatcgcatgatgcgtccg
ggcgaaccgccgaccaaggaagcggcagatgccttgtttaaaaacctgttctttactcct
gaacgctatgatttgtccgatgtcggccgtatgaagctaaaccgtcgcgttggcagaagc
gagattaccggaccaggcgtactgtccaaagacgatattatcgatgtgttaaaaacattg
attcgcatacgtaacggtgaagatgtggtggatgatatcgatcaccttggtaaccgtcgt
gtccgctgcgtgggtgaaatgacggaaaaccagttccgcataggcctggtgcgtgtagaa
cgcgctgtcaaggagcgcttgagtctgccggatattgaagctgtcatgcctcaggacatt
atcaatgcgaaaccgatctcagccgcgatcaaggagttttttggttccagccagctttct
caatttatggatcagaataaccccttgtcggaaattacacataaacgccgtgtttccgct
ttagggcctggcggcttgtcgcgtgaacgcgccggctttgaagtgcgtgacgttcatcct
acccattacggccgtgtttgtcctattgaaacaccggaaggtccgaatatcggattgatc
aactctcttgctgtctatgcgcgtacgaatgaatatggcttcctggaaacgccttatcgc
aaggtagtgaataataaggtgacagatgaggtggtttatctttcagcgattgaagaaggc
gactatgtcattgctcaggctaatgcgtctgttgacgacaaacgccgtttgaccgatacg
cttgttccggttaggcatcgcaatgaatttacattttctacgcctgaccgcgtacagttc
atggatgtatcgcccaaacaaatcgtttcggtggcggcagccctcatcccctttctggaa
catgacgacgccaaccgcgccttgatgggatcaaacatgcagcggcaagctgttcccact
cttaagactgaaaagcctttggttggcactggcatcgagcatctggttgctaaagactca
ggtgtcacggtagttgccaaacgcggcggcattgttgattacgtggatgcatcccgtatt
gtggtgcgtgttaatgaagatgaagcggaacctggcagcaccggcgttgatatctatggt
ctgacaaaatacacccggaccaaccaggacacttgtatcaaccagcgtcctctggttgcg
ataggtgatgtgatcgcaaaacaagacgtattggctgacggccagtcgactgacaccggc
gaattagcgctggggcaaaacctgctggtggccttcatgccctggaatggatacaacttt
gaagattccatcctgatttctgagcgtgtggttcaggaagaccgctttaccagtattcac
attgaggaattgacttgcgttgcgcgtgacaccaagctggggcccgaagaaattacgggt
gatatcccgaatgtcagcgaaagcgctctttccaagctggatgagtgcgggatcgtttat
ataggcgcggaagtcaactccggagatattctggtaggtaaggtgacaccaaaaggtgaa
acccagctcacaccagaagaaaaactgctgcgcgctatctttggcgaaaaagcatcagat
gtgaaagatacctcgctgcgtgttccgactggcatggaaggaacggtgattgatgtccag
gtgttcacgcgtgaaggagtcaaaaaagattcccgcgtacaagaaattgaaaagaatgaa
ctggcaaaagccaagcaggatttaagcgatgaaatgcgtatcaaggaaaatgatgtgttt
tcacgtgttgaaaaattgctgctcaaccgtacggctgaaggcggtcctaataagctgaag
aagggttccaagattaccaaggcttaccttggtgaactggcgcgtgaaaaatggtttgaa
atccacttgaaagataccgcagccagtaaacagctggaatcagcagccaaacagatcaaa
aaaatcaggctcgattttgaaaaggcttatgaagcaaaacgtcaaaaaatcactcagagt
gacgatttggctccaggcgtactaaagattgtcaaagtctatctcgctgtcaaacgccgc
gtacaacctggcgacaagatggctggccgtcacggtaacaaaggcgtgatatccatgatt
gtgccggtggaagatatgccgtacctggcggacggtactccggttgatatcgtgttgaac
ccgttaggcgtaccttcacgtatgaacgttgggcaggtgctggaaacccatctgggatgg
gcgtcaaaagaattgggacgcaaagtcagccagatgctggatgcgcagcagtcagtgcgt
aatctccgccatttcctgaaccagatttacagcgttggaaagacaaaggaaagtctgacc
agtctgaatgatgatgaagtcttgaccctcgcgaacaacttgcgcgcaggtgtgccgttc
ggaacgcctgtgtttgacggagcgtccgaagaagaaatcaagaccatgcttcagcttgcc
ggtcttcctgaaacaggccaggccatattgcatgacggccgtactggcgtcgcctttgac
cgtcctgtgacagtgggttacatgtacatgatgaagctgaaccatctggtagacgacaag
atgcacgcacgttcgaccggatcctacagtctggtaacccagcagcctttgggcggtaag
gcccagttcggcggccagcggtttggtgaaatggaagtatgggcgctggaagcctatggc
gctgcctataccctgcaggaaatgttgacagttaaatcagacgacgtgaccggacgcacc
aagatgtataaaaacatcgtggacagcgagcactatatggagtccaacatgccggaagcc
ttcaacgtgctcattaaggaaatccgttcattggcgatcaacatcgaatttgattga
DBGET
integrated database retrieval system
