Aquicella siphonis: AQUSIP_13920
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Entry
AQUSIP_13920 CDS
T06267
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asip
Aquicella siphonis
Pathway
asip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AQUSIP_13920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asip03400
]
AQUSIP_13920 (mfd)
Enzymes [BR:
asip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AQUSIP_13920 (mfd)
DNA repair and recombination proteins [BR:
asip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AQUSIP_13920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
VVC76087
UniProt:
A0A5E4PI03
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All DBs
Position
1:1446334..1449777
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AA seq
1147 aa
AA seq
DB search
MSTADLFHPPLPGKQGEQFTWKNLHGSSIALALSAVLLNHPRPILMIAPDSLFASHLVDE
LEFFSGMTENILFFPDWETLPYDHFSPHQDIVSERLTALHRIPQMQSGAVITTVSTLMHR
LAPRHFLDRHTLLLKTGDQLNPDIFRTRLTEAGYHAVSQVREHGEFAIRGSIIDLYPMGN
NTPYRIDLFDNEVDTIRLFSPDTQRSLDKIDEIRLLPAKEFPLNENAIEMFRQNWRGQFS
GNPLKAPIYQDVSEGICSPGIEYYLPFFFDKTATLFDYLPAETLIITIGDIQAKANEFWQ
EISSRHEQGRHDLSRPLLLPQQIFLPVDVLNQSLHEYADIHIHNETKKRAYEFATAPAPA
MDINHKATQPLAPLQQFVQAYPGRILFCAETLGRREVLLQLFQSIALQPKYFTSWQQFIS
SNERCGIVVTSLDEGFSLDDPRITILPESRLYGNRVMQRRMRKKTTQDPDALIRDLTELQ
IDDAVVHIDHGVGRYRGLQTLKVGDQTGEFLMLEYQGGDKLYVPVASLHLVSRYTGSDPE
HTPINKLGTDVWTRAKRRAAEKVRDVAAELLDLYSKRAARPGHAYVLPQDQYAAFAAAFP
FEETPDQLQAIEQVFNDMTSDKPMDRVICGDVGFGKTEVALRAAFLTVQNGKQVALLVPT
TLLAQQHYENFRNRFAEWPIQIEMLSRFRTGKETKTALQRMEEGKVDIVIGTHKLLQDDI
RFKSLGLVIIDEEHRFGVKQKEKLKALRSMVDILTLTATPIPRTLNMALSGIRDLSVIAT
PPLKRLSVKTFVHEYQDPIIQEAIQREIMRGGQVYFLHNDVSTINKKAEEIKNLVHESRP
AVAHGQMHERELERVMAAFYHRHSNVLVCSTIIESGIDIPTANTIIINRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPKHSITSDAEKRLDAIASLDDLGIGFTLATHDLEIRGAGEL
LGEDQSGNMHEIGFTLYMDLLSRAVDALKEGKEPDLDKSLLHHRSEIDLHLTALIPEDYL
GDVQLRLQFYKRIANAKDQRALDDIQVEMIDRFGLLPDPLKNLIAITELKQKADALGILK
IEAGDKGGKFEFTERPRVKPETIIRLIQIKSARYRLDGPSRLRFTLDRHEAKDRVRLVEQ
LLSELSA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgctgatttgttccatcctcctttgcctgggaaacaaggcgagcaattcacc
tggaaaaacctgcatggatccagcatcgcactggcgctgagtgctgtattgcttaatcat
ccccgccctatcctcatgatcgcgccagacagtttgtttgcatctcatctggttgatgaa
ttggaattttttagcggaatgactgaaaacattctttttttcccggactgggaaacgctg
ccatatgatcatttttctcctcaccaggacattgtctcagaacgattgaccgcacttcac
agaattccacaaatgcaaagcggcgccgtcattacaacagtttccacacttatgcaccgg
ctggctccccgccattttctggacaggcataccttgctgttaaaaacaggtgatcaatta
aatccggacatcttcaggacacggctgacggaagccgggtatcacgctgtcagtcaggta
agagaacacggtgaatttgccatccgcggttctattattgacttgtatcctatgggaaac
aacacaccttaccgcatcgatttgtttgataacgaagttgatacgattcggctgttctcg
ccagacacacagcggtcactggataaaatcgatgaaatccgcctccttccagccaaagaa
tttcccctgaatgaaaacgccatagaaatgttccggcaaaactggcgcggtcaattcagc
ggcaatccgctgaaggcgcccatttatcaggacgtgagcgaaggcatatgctcgcctgga
atcgaatattatctgccattcttttttgacaagaccgccacactgtttgactatttacct
gcggaaacactcattatcacaatcggcgacatacaggcaaaagccaatgaattctggcaa
gaaatttcctcgcgccatgaacagggacgacatgatctgtcccggcctctgctgttgcct
caacagatattcctgcctgtcgatgttttgaaccagtcactgcatgaatacgcagatatc
catattcataacgaaacgaaaaagcgggcatatgaattcgccactgcaccggcgcctgcc
atggacatcaatcataaagccactcagccgctcgccccattgcaacagttcgtgcaagct
tatccaggccggattctgttttgcgcggaaacactgggacgccgggaagtattgctgcaa
ttattccagagtatcgcgcttcagccaaagtattttacgtcctggcagcaattcatctcg
tccaatgagcgctgcggcattgtcgtgacatcattggatgagggattttcgctggatgat
ccgcgtatcaccatactccccgaaagccggctgtacggcaatcgtgtcatgcaaagacgc
atgcgtaaaaaaaccacgcaagatcctgacgcgctgattcgtgatctgacggaattacag
atcgatgatgccgtggtgcacatagatcatggcgtcggccgctaccgcggcctgcagaca
ctaaaggtaggtgatcaaaccggcgaatttctcatgttggaatatcagggcggagacaag
ctttatgttcctgtcgcctcattgcatcttgtcagccgctataccggatccgaccccgaa
cacacccccataaacaagctggggacagatgtctggacacgcgcgaaacggcgtgccgct
gaaaaagtccgggatgttgccgcggagttgctggacctatattcaaagcgcgccgcgcgc
cccggccatgcgtatgtcttgccccaggatcaatacgccgctttcgctgcggcctttccg
tttgaagaaacgcctgatcaattgcaagccattgaacaggtattcaatgacatgacttct
gacaagcccatggacagagtgatctgcggtgacgtggggtttggaaaaacagaggtcgcc
ttgcgggctgcgtttctcacggtccagaatggaaaacaggtcgcgctgctcgttcccact
accttgctggcccagcagcattatgagaatttccgcaaccgcttcgctgagtggcccatt
caaattgaaatgttatcccgctttcgcaccggcaaggaaaccaaaacagcgctgcagcgg
atggaagagggaaaagtcgatatagtcattggcacgcacaagttattacaagatgacatc
cggttcaaatcgctgggcctggtcatcatcgatgaagaacatcgctttggcgtcaagcaa
aaagaaaagctgaaagctttgcggtccatggtagatatactcaccctgacggcaactccc
atcccgcgcacgctcaacatggcattatccggcatacgcgatctctcagtcatcgcgacg
ccgccgctcaagcggttgtctgtcaaaacattcgtgcatgaatatcaagatcctatcatt
caggaagccatccagcgggaaatcatgcgcgggggtcaagtctattttttgcataacgat
gtcagcactatcaataaaaaggccgaagaaatcaaaaacctggtccacgaatcccgtccc
gccgtcgcccatggacaaatgcatgaacgcgaactggaacgagtgatggcggcgttctac
caccgccactcgaacgtcctggtctgctccactatcattgaaagcggcatcgatattccc
accgccaacaccatcattatcaaccgtgccgataaattcggcctcgcccaactgcatcaa
ctacggggacgcgtcggccgatcacaccatcaggcctatgcttatctgttgactccgcca
aaacacagcatcacgagcgacgcggagaaacgactggacgcaatcgcatcactggatgat
cttggcatcgggttcacgctagcgacacacgatctggaaattcgcggtgcgggtgaatta
ttaggtgaagaccaaagcggcaacatgcacgaaatcgggttcactctctatatggattta
ctctcgcgcgccgtggacgcgctcaaggaaggcaaggaacccgaccttgacaaatccctg
ctgcaccaccgttcggaaatcgatttgcatctcacggcgctcataccggaagattatctg
ggtgatgtgcaattaagactgcagttttataaacgcatcgcgaatgcaaaagaccagcgc
gcgctggacgatatccaggtggaaatgattgaccggtttggattgctgcccgatccgctg
aaaaacctgatcgccatcacagaattaaaacagaaggctgatgcgctgggaatcctgaaa
atagaggccggtgacaaaggcggcaaatttgaatttacagaaagaccccgcgtcaaacca
gaaaccatcattcgtctcatacaaatcaaatccgcccgctaccgtctcgacggcccgtcc
cgcctccgcttcaccctggaccggcatgaggcaaaagaccgggtgcgcctggtcgaacag
ttattgagcgagctgagcgcttga
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