Aquicella siphonis: AQUSIP_14440
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Entry
AQUSIP_14440 CDS
T06267
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asip
Aquicella siphonis
Pathway
asip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQUSIP_14440 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asip03019
]
AQUSIP_14440 (rne)
03009 Ribosome biogenesis [BR:
asip03009
]
AQUSIP_14440 (rne)
Enzymes [BR:
asip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AQUSIP_14440 (rne)
Messenger RNA biogenesis [BR:
asip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AQUSIP_14440 (rne)
Ribosome biogenesis [BR:
asip03009
]
Prokaryotic type
rRNA processing factors
AQUSIP_14440 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
VVC76139
UniProt:
A0A5E4PGP1
LinkDB
All DBs
Position
1:1507941..1510412
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AA seq
823 aa
AA seq
DB search
MNRMLINATHKDEELRIALATGQFLYDLIIESTFREQKQSNIYKGKVTRIEPSLEAAFVD
YGEERHGFLPLKEIARSCFRKEYNDSGRRPTITEVLEEGQELIVQVEKEERGNKGAALTT
FITLPGCYLVLMPNNPRAGGVSRRIEGDERDELHSVLNTLQVPDGMGLIIRTAGGGRSPE
ELQWDLEILLRLWGVIQKAADERQASFLIYQEGNAVIRALRDYLRKDIDEILIDHQDVYE
DVVNHLKLIRPDFVSRVKLYKDPTPLFTRFQIESQIESAFQRDVRLPSGGSIIIDHTEAL
VSIDINSAKSTKGGDIEETALMTNLEAANEIARQLRLRDIGGLIVIDFIDMTPIRNQREV
EDRLRKALDMDRARVQIGRISRFGLLEMSRQRLRPSLGEASRVTCPRCQGQGTIRGIESL
GLSIIRIIEEEALKENTAQVRAILPTEIAAYLLNEKRQAIIDIEKRQSVAIIVVPSAHLL
TPQYEVERIRISDITEKDEKLASYKLAIKPEISSQTVMPPVPKAHQEPAIKSMPMEEMPA
PAAAPVIPSQSTGGNGEPGLLKKLLNYFFEKKELPAAASSGEQGGDSDQGEGLKRHGRLR
GQPSRHKGGPRHRHRGGRRDRGRHGGSGSHRTFESREPRESRERDSREPREPRERDNREP
RESRERDNREPRESRVRDNRDFRQKESRQQRDQETRNISSSSESHQPSSMPQHHAAAATP
VSQPQPAETIIKPVEIQTSASNVYSPSTQVANQPIQSPQQQTGESQTASGEKTERAERKP
RHRFHHRYRHSKQHAHKQEPGEQNRHTLEGEDIYSVKKKDEEA
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaatgctcatcaatgcaactcataaagacgaagagttgcgaatcgccctggct
accggccaatttctttatgacctgattatcgaatcaaccttccgggaacaaaagcaatcc
aatatttataaaggcaaggtcacccgaattgaacccagcctggaagcagcatttgtagat
tacggcgaagaacgtcacggattcttgcctctcaaggaaattgcgcgctcctgcttcaga
aaagaatacaatgacagcggcaggcgcccaaccattaccgaagtcctggaagaaggccag
gaattgattgttcaggttgaaaaggaagagcgcggcaacaaaggtgcggccctcaccact
ttcattaccctgccaggctgctatctggttctcatgcccaataatccacgcgcaggcgga
gtgtcacgccgtatcgaaggcgacgaacgcgatgagttacacagcgtcctcaacaccttg
caagtaccggacggcatgggtctcattatccgcacagccggcggcggtcgttcgcctgaa
gaattgcaatgggacctggaaatcctgctcaggttgtggggagtgattcaaaaggcagcg
gatgagcgccaggcctcatttctcatttaccaggaaggcaacgctgtcatacgcgccttg
cgggattatctgcgcaaagacattgatgaaatcctaattgatcatcaagatgtatacgaa
gatgtagtcaatcatctcaagctgatcagaccagactttgtcagccgcgtcaaattatat
aaagatcccacccctttgttcacacgttttcagattgaaagccagattgaatccgctttt
cagcgtgacgtacggttaccgtctggcggatccatcattattgatcatacggaagcactg
gtttccattgatatcaactctgccaagtcaaccaaaggcggcgatatagaagaaaccgct
ctcatgaccaacctggaagcggccaatgaaatcgccagacagttacgtttacgtgacatc
ggcggattgatagtcatcgacttcattgatatgacacccattcgcaaccagcgcgaagtg
gaagaccggcttcgaaaagccctggatatggacagggcgcgtgttcaaatcggccgcatt
tcccgcttcgggctgcttgaaatgtcgcgccagcgtctcagaccatcattgggtgaagcg
agccgggtcacctgtcctcgctgccagggccaaggaaccatacgcggcatagaatcactc
ggtctttcgattatccgcatcattgaagaagaagcattaaaggaaaataccgcacaggta
cgcgcgatacttcccacagaaatcgccgcctatttgctcaatgaaaaacgacaggcaatt
atagatattgaaaagcgtcagagtgttgccataattgttgtacccagcgcccatctcttg
acacctcaatatgaagtcgaacgcattcgtatttcagatattacagaaaaagatgaaaaa
ctcgccagctacaagctcgcgatcaaaccggaaatctccagtcaaaccgtaatgccgcct
gttccaaaagcacatcaggaaccggcgatcaaaagtatgcccatggaagaaatgccggct
ccggcagccgcgcctgttatcccctctcaaagcaccggcggaaatggagaacccggctta
ctgaaaaaactattgaattactttttcgagaaaaaggaattacccgccgctgcttcatct
ggcgaacaaggtggtgatagtgatcaaggggaagggttgaaaagacatggcagactacgc
ggccagccttccaggcacaagggcggcccacgccatcgtcatcgtggaggacgcagagac
cgcggccgccatggcggaagcgggagccaccgaacatttgaaagccgcgaacctagagag
tctcgcgaacgcgacagccgcgaacccagagaaccccgtgaacgtgacaatcgcgaaccc
agagaatctcgtgaacgcgataaccgcgaacccagagagtctcgcgtgcgtgacaatcgt
gatttccggcagaaagaatccagacagcaacgtgatcaagagacacgcaatatctcgtct
tcttccgaatcacatcagccatcttccatgccgcaacatcatgcagctgcagcaacccct
gtcagccagccccaaccggcagaaacaataatcaagccggttgaaatccaaacatctgcc
agtaatgtgtactcacccagcacccaggtagccaatcaacccattcaatccccgcagcag
caaacgggcgaaagccagactgcatcaggtgaaaagaccgaaagagctgaaagaaaacca
cggcatcgttttcatcatcgttacagacactcgaaacagcatgctcacaaacaggagccg
ggagaacaaaatcgccataccctggaaggagaagatatctatagtgtcaaaaagaaagat
gaagaagcctga
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