Aliarcobacter skirrowii: EI285_03425
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Entry
EI285_03425 CDS
T05743
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ask
Aliarcobacter skirrowii
Pathway
ask03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ask00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI285_03425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ask03019
]
EI285_03425
Enzymes [BR:
ask01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EI285_03425
Messenger RNA biogenesis [BR:
ask03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EI285_03425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AZL53676
LinkDB
All DBs
Position
635979..637277
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AA seq
432 aa
AA seq
DB search
MSFLNLGLCPQILRAVEEEGYTIATPIQAKAIPVILSKKDVLAAAQTGTGKTAGFTLPLL
ELLNKNYSKDRKSSVKALILTPTRELATQVAQSVEVYGKYLPFKSAVIFGGVGINPQKAI
LKMGVDIVTATPGRLLDLVFQDCLDLSKVEFLVLDEADRMLDMGFIHDIKKILSILPKHR
QNLLFSATFSPEIKKLADGLLKTPVLIEVSKANSTSHKVEQTVHHVDKERKKELLIHLLN
KNSWKQVLVFTRTKHGANKLSEALIKDKITSAAIHGNKSQGARTKALDDFKAGTVRVLVA
TDIAARGIDIDQLPHVINFELPNVPEDYVHRIGRTGRAGNSGDAISLVCIDEHDYLLAIE
KLIKQKINKIAIEGFKVNPNIKAEPISNGRNRAKSGANRATQSRASKTEDKTSSSKRNFG
RNRRVSSSLKSK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttttaaatttaggattatgtccacaaattcttcgtgcagtagaagaagagggc
tatacaatagcaactcctattcaagcaaaggctattccagttatattgtcaaaaaaagat
gttttagcagctgctcaaacaggaactggaaaaacagctggttttacacttccacttttg
gaattattaaataaaaactattcaaaagatagaaaaagttctgtaaaagcacttatttta
actccaacaagagagttagcaacacaagtagctcaaagtgttgaagtttatggaaaatat
cttccatttaaatcagctgttatttttggaggagttggaataaatcctcaaaaagcaatc
ttaaaaatgggtgttgatattgtaacagcaactcctggaagattacttgatttggttttt
caagactgtttagatttatcaaaagtagagtttttggttttagatgaagctgatagaatg
cttgatatggggtttattcatgatattaaaaagatattatcaattttgccaaaacataga
caaaatctacttttttcagctactttttcaccagagattaaaaaattagcagatggattg
ctaaaaactcctgttttaatagaggtttcaaaagcaaatagtacttcacataaagttgaa
caaactgttcatcatgttgataaagagagaaaaaaagagcttttaattcatcttttaaat
aaaaatagctggaaacaagttttagtttttacaagaacaaaacatggtgcaaataaacta
agtgaagctttaataaaagataaaataacttcagctgcaattcatggaaataaatctcaa
ggtgcaagaacaaaagctttggatgattttaaagctggaactgtaagagttttggttgca
actgatattgctgcaaggggaattgatatagaccaacttcctcatgtaataaattttgag
ttaccaaatgttcctgaagattatgttcatagaattggaagaactggaagggctggaaat
agtggagatgctatatctttagtttgtattgatgagcatgattatttgttagcaattgag
aaattaattaaacaaaagataaataaaatagcaatagaaggatttaaagtaaatccaaat
ataaaagcagaacctatttcaaatggtagaaatagagcaaaaagtggtgcaaatagagca
acacaaagtagagcttctaaaacagaagataaaacttctagttcgaaaagaaattttggt
agaaatagaagagtaagctctagtttaaaaagtaaatag
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