Aliarcobacter skirrowii: EI285_05900
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Entry
EI285_05900 CDS
T05743
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ask
Aliarcobacter skirrowii
Pathway
ask03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ask00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI285_05900 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ask03019
]
EI285_05900 (rny)
Messenger RNA biogenesis [BR:
ask03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EI285_05900 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
KH_KhpA-B
HDOD
KH_NusA_C
Cas3_HD
Spectrin_3
TFIIA_gamma_N
Motif
Other DBs
NCBI-ProteinID:
AZL54138
LinkDB
All DBs
Position
complement(1111108..1112652)
Genome browser
AA seq
514 aa
AA seq
DB search
MESIILAIVVAFLSSAITVFVVRKIHKAKFEVFIEQAKAKARIIEHEAEVALKDAQLKAK
FECDREFKNARKEYENMLFKIEKKEKDLNEHLESELKAIKREKEQIEENNRKIRTLKDGL
EEQKKAYEQKTLEAMKILENGSGLTKSEAKELMLKKVEEDSRATISSIFRKKYKLAEQNS
KQEINNILSQAVTRYAGEFAAERLINNIPLNDEETKGKIIGKEGRNIKALEMLLGVDIII
DDTPNTITVSSFNLYRRAIATRTIQELLEDGRIQPARIEEIYKKVKAEFDKNIQKEGEDV
VMELGIKSMHPELIKLVGRLRYRASYGQNALAHTLEVAHLAGLIAAQMGGDAILARRAGL
MHDIGKALTHEAPGSHVDLGADICKRYGECETVINAIYAHHGHEEPINVESAAVCAADAL
SAARPGARREVLESFLKRVEEIENITTSKIGVTNAYAINAGREVRVIVNANLVNDDEAVL
LATEIAKEIEEKVQYPGEIKINVIRELRAESYAR
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggagagtataatattagcaatagttgtagcttttttaagttctgcaattactgttttt
gttgttagaaaaatacataaagcaaagtttgaagtatttattgaacaagcaaaagcaaaa
gcaagaataattgagcatgaagctgaagttgcactaaaagacgctcagctaaaagcaaag
tttgagtgtgatagggagtttaaaaatgctagaaaagagtatgagaatatgctctttaag
atagagaaaaaagagaaagatttaaatgaacatttagagagtgaattaaaagctataaaa
agagaaaaagagcagattgaagagaataatagaaaaattagaactctaaaagatggttta
gaagagcaaaaaaaggcttatgaacaaaaaactttagaagctatgaagatcttagaaaat
ggttctggtcttacaaaaagtgaagcaaaagagttgatgttaaaaaaagttgaagaggat
tcacgagctacaatatcttcaatatttagaaaaaaatataaacttgctgagcaaaactca
aaacaggagattaataatattttgtctcaagcagttactagatatgcaggagagtttgca
gcagagagacttataaataatattcctttaaatgatgaagagacaaaaggaaagattatt
ggaaaagagggtagaaatataaaagcattagagatgcttttaggtgttgatattattata
gatgatactccaaatacaattacggtttcatcttttaatctatacagacgtgccattgct
acaagaacaattcaagagctacttgaagatggaagaattcaaccagcaagaattgaagaa
atttacaaaaaagtaaaagctgaatttgataaaaatattcaaaaagagggtgaagatgtt
gttatggaacttggaattaaatctatgcatcctgaacttatcaaacttgttggaagatta
agatatagagcaagttatggacaaaatgcacttgcacatacactagaagttgctcattta
gcaggtcttattgctgcacaaatgggtggagatgcaatacttgcaagaagagctggactt
atgcatgatattggaaaagctttaactcatgaagctcctggaagtcatgttgatttaggt
gctgatatttgtaaaagatatggagagtgtgaaactgtgataaatgcaatttatgctcat
catggtcatgaagagccaataaatgttgaaagtgcagctgtttgtgcagctgatgcttta
agtgctgcaagaccaggggcaagaagagaagttttagagagcttcttaaaacgagttgaa
gagattgaaaatataactacaagtaaaattggtgttacaaatgcttatgctattaatgct
ggacgagaagtgcgagttatagtaaatgcaaatcttgtaaatgatgatgaggcagtttta
ttggcaacagagatagcaaaagagattgaagagaaagttcaatatccaggtgagataaaa
ataaatgtaataagagagttaagagctgaaagttacgctagataa
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