Aliarcobacter skirrowii: EI285_08610
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Entry
EI285_08610 CDS
T05743
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ask
Aliarcobacter skirrowii
Pathway
ask03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ask00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EI285_08610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ask03019
]
EI285_08610
03016 Transfer RNA biogenesis [BR:
ask03016
]
EI285_08610
Enzymes [BR:
ask01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EI285_08610
Messenger RNA biogenesis [BR:
ask03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EI285_08610
Transfer RNA biogenesis [BR:
ask03016
]
Prokaryotic type
tRNA degradation factors
EI285_08610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
AZL54630
LinkDB
All DBs
Position
complement(1643515..1645362)
Genome browser
AA seq
615 aa
AA seq
DB search
MLKEIFIKIEKEIFEFKNSELEILEKYIKDKIVIKKDNRYEINSKYKIGILKIEKNFAIL
EDLTNPIKNIKLELDSLNGAFNNDLVLAKRIFNPRSKIKAKIEKVLDGKKAEILVYVKDK
TFITLKENIFLNSSKASKYKQSDVLIVDNKEFEEIEFIGNLNDAKIDEFISLYLYEELYR
DKQRVEADDFIEDIEQRVDLRELPFCTIDPNSAKDHDDAIYFDEKNSTLFVAIADVSYFV
KEGSPLDNLAFKKSSTIYLPSRTLPMLPATLSENLCSLKEGEDRYAYVFKLKLDLKKLRV
EKSELFTAIIKNHRNFSYGRIDRVLEGKFDLYNSLEKEIFDYLLPLYKITKKFRTDRLKI
GYDFRTVENRLKLKNYLLDSIEVENSTPSHQLIEECMLLANIEASKKVGNLGIFRIHEEP
NFKALSKLVDDVNILGVKVKLQENVHKTITHIQEESSRALIRDEVDELIIQSLTQAKYSS
KNLGHFGLGFKSYSHFTSPIRRYSDLVLHRILKTKKLPKNIDDICTHISEQERKIDKLVW
DFEDRKYARWAYDNIDSEIRVKIVDTERAKAVCYDKIIGLKVVLENYKGQKLFSKHKVKI
VSSDLATKLIVAKIL
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaagagatatttataaaaattgagaaagagatttttgagtttaaaaatagtgaa
ttagaaattttagaaaaatatattaaagataaaatagttataaaaaaagataatagatat
gagataaattctaaatataagattggaattttaaaaatagagaagaattttgcaatatta
gaggatttaactaatccaataaaaaatataaaattggagttagatagtttaaatggcgca
tttaacaatgatttagtattagcaaagcgtatatttaatccaagaagtaaaataaaagca
aaaattgaaaaagtattagatggtaaaaaagcagaaattttagtctatgttaaagataaa
acatttattactttaaaagagaatatctttttaaatagttctaaagcttcaaagtataaa
cagagtgatgttttgatagtagataataaagagtttgaagagattgagtttattggaaat
ttaaatgatgcaaaaatagatgagtttatctctttatatctatatgaagaactttataga
gataaacaaagagttgaagctgatgattttattgaagatatagaacaaagagttgattta
agagaattgccattttgtacaatagatccaaatagtgcaaaagatcatgatgatgctata
tattttgatgagaaaaatagcacactttttgtagcaattgcagatgtctcatattttgta
aaagagggtagtcctttagataatttagcttttaaaaaatcatctactatatatctgcca
agtagaactttgccaatgttaccagcaacattgagtgaaaatttgtgttcacttaaagag
ggcgaagatagatatgcctatgtttttaaattgaaattagatttaaaaaagttaagagtt
gaaaagagtgaactttttacagcaattataaaaaatcatagaaatttctcttatggtaga
attgatagagttttagaaggtaaatttgatttatataatagtttagaaaaagagattttt
gattatttactacctttatataaaattacaaaaaaatttagaacagatagattaaaaata
ggttatgactttagaactgttgagaatagattaaaattaaaaaactatttattagattca
attgaagttgaaaactctacaccatctcatcaattaatagaggagtgtatgttattagca
aatattgaagctagtaaaaaagttggaaatttaggaatatttaggattcatgaagagcca
aattttaaagctttatcaaagctagttgatgatgtaaatattttaggtgtaaaagtaaaa
cttcaagaaaatgttcacaaaactattactcatattcaagaagaatcaagtagggcgcta
attagagatgaagttgatgagcttattattcaaagtcttactcaagcaaaatatagctca
aaaaatttaggtcactttggtttaggatttaaatcatactctcactttacaagtcctatt
agaagatattcagatttagttcttcatcgtattttaaaaaccaaaaagttaccaaaaaat
atagatgatatttgtactcatatatcagagcaagagagaaaaatagataaacttgtttgg
gattttgaagatagaaaatatgcaagatgggcatatgataatattgatagtgaaattaga
gtaaaaatagttgatacagaaagagctaaagctgtttgttatgataagataatcggatta
aaagtagttttagagaactataaaggtcaaaaacttttttcaaaacataaagttaaaata
gtatcaagtgatttagcaactaaattaatagttgctaaaatattataa
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