Aequorivita sublithincola: Aeqsu_0233
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Entry
Aeqsu_0233 CDS
T02132
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asl
Aequorivita sublithincola
Pathway
asl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aeqsu_0233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asl03019
]
Aeqsu_0233
03009 Ribosome biogenesis [BR:
asl03009
]
Aeqsu_0233
Enzymes [BR:
asl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aeqsu_0233
Messenger RNA biogenesis [BR:
asl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aeqsu_0233
Ribosome biogenesis [BR:
asl03009
]
Prokaryotic type
rRNA helicases
Aeqsu_0233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
DUF4358
Motif
Other DBs
NCBI-ProteinID:
AFL79756
UniProt:
I3YRY8
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All DBs
Position
complement(235456..237306)
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AA seq
616 aa
AA seq
DB search
MTAFKALGLEEHLLKAIADLGFETPSEVQEKAIPILLERETDMVSLAQTGTGKTAAFGFP
MLQKIDVKSRTTQGLILSPTRELCLQITNEMIAYGKYMPGLNVTAIYGGASITDQARQIK
KGSQVIVATPGRMKDMIGRGLIDISKIEYCVLDEADEMLNMGFYEDITEILSHSPKEKST
WLFSATMPKEVSTIAKKFMHTPVEITVGTKNVGSDQVSHEYYLVNARDRYSALKRLADAN
PEIFSVIFCRTKRDTQKVAEQLIEDGYNAAALHGDLSQSQRDTVMKSFRARQIQMLVATD
VAARGIDVDDITHVINYQLPDETEIYTHRSGRTGRAGKTGISMVIVSKSEVRKIHTIEKM
IQKKFIAKEIPSGMEICEVQMFHLANNIKDTKINPEINAYLPNINEVLADFSKEELIQKV
FSVEFTRFLNYYKNSKDLNISGGSERNYAEENKDSTRYFLNIGNKDDFDWMSLKDFLRDL
LQLGKDDVYKVDVKDSFSFFNTDTTHQELVMGIFKDFQLEGRQINVEISKDTGRSGGRSS
GGGGRDRDRSKRRGDRNDRGDRGDRGGDRGERKGSFKKRSSGGFGGGDKPAFKGKSRRSS
ERPDTKGTGGRRRRKD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatttaaagcactcggcttggaagaacatcttctaaaagcgatcgccgacttg
ggttttgaaaccccttcggaagtacaagaaaaagcaattccaatccttttagagcgcgaa
accgatatggtttcccttgcgcaaacaggaactggtaaaaccgcagcatttggtttccca
atgttgcaaaaaattgacgtaaaaagtcgcaccacacaaggtcttatcctttcgccaact
cgcgaactttgtcttcaaattacaaatgaaatgatagcttatggtaagtatatgccaggg
ctaaacgtaaccgctatttatggtggagcgagtataaccgaccaagcacgccagattaaa
aaaggttcgcaggttatcgttgccacgccgggacgtatgaaagatatgattggccgtggg
ttgatcgatatatcaaaaattgaatattgcgtgctagatgaagcagatgaaatgctcaac
atgggcttttatgaagacatcaccgaaatcctttcacactcgccaaaagagaaaagtact
tggttgtttagcgcaacaatgccgaaagaggtttctaccattgcaaagaaatttatgcat
actccggtagaaattaccgttggaacaaagaacgtaggttcagaccaagtttcacacgaa
tattatttagtgaacgctcgcgaccgttatagcgctttgaaacgtttggcagatgcaaat
ccagaaattttttctgtaattttctgtagaacaaaacgcgacacacaaaaagttgccgaa
caacttattgaagacggatacaatgctgcagcacttcacggagatttaagccaaagccaa
cgtgatacggtaatgaaatcattccgcgcacgccaaatacaaatgcttgttgcaacagac
gttgccgctcgtggaattgacgtggacgatattacacacgtaataaattaccaattgcca
gacgaaactgaaatctacactcaccgaagcggtcgtacgggtcgtgcaggaaagactggg
atttctatggttatcgtttcaaaaagtgaagtgcgaaaaattcacacaattgaaaaaatg
attcaaaagaaattcatagcaaaggaaattccttctggaatggaaatctgtgaagttcag
atgtttcacttggcaaataatataaaagacacgaaaattaaccctgaaataaatgcttat
cttccgaatataaatgaagtattggctgatttttctaaggaagaattaatccaaaaagta
ttttcagttgaatttactcgtttcttgaattactacaaaaacagtaaagatcttaatatt
tcaggaggcagcgaacgcaattatgctgaagaaaataaagacagtacgcgttatttctta
aacatcggtaataaagacgatttcgattggatgagtttgaaggatttccttcgtgatttg
ttgcaactaggaaaagacgatgtttataaagttgacgtaaaagacagtttctctttcttt
aatacagatacgacacaccaagaattagtgatgggtatcttcaaggatttccaactagaa
ggacgtcagattaatgtcgaaatttctaaagacacaggtcgtagcggcggtagaagcagt
ggtggtggcggacgcgatcgcgaccgtagcaaaagaagaggcgatagaaacgatcgagga
gatcgtggagacagaggtggagatcgcggcgaacgcaaaggaagtttcaaaaagcgtagc
agcggtggtttcggcggaggcgacaaaccagcttttaaaggtaaaagccgaagaagcagt
gagcgcccagatactaaaggtactggcggaagacgcagaagaaaggactaa
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