Actinomyces slackii: NCTC11923_00637
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Entry
NCTC11923_00637 CDS
T06783
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
asla
Actinomyces slackii
Brite
KEGG Orthology (KO) [BR:
asla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asla03019
]
NCTC11923_00637
Enzymes [BR:
asla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC11923_00637
Messenger RNA biogenesis [BR:
asla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC11923_00637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_22
AAA_16
AAA_19
ResIII
AAA_30
PhoH
Helicase_RecD
NACHT
UvrD-helicase
Cas3-like_C_2
nSTAND3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
VEG74019
UniProt:
A0A448KAR7
LinkDB
All DBs
Position
1:complement(765455..768352)
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AA seq
965 aa
AA seq
DB search
MSAAPRSSSTTVPPSAGDPIAALLASPPDLPFAAALEPLRAALAGPGPAVVVTAPAGTGK
TTLAPALVADALARAGSTGRVVVTQPRRMAARAAARRLAGLLGQELGETIGYAVRGERRS
GPDTRIEIVTAGLLLRRLQADPELAGIGAVILDEAHERALDSDLLLALLLDARGLREDLP
LVAMSATLEAERLTAVMGARAVTAQGAAHPVEEQWAPGPGRLGARGVPREFLAHVARTTA
QALEAHEGDALVFLPGAREVEEVVARLRGLVAREVDVLALHGRLPASAQDAALRPGAGRR
VVVSTNVAESSLTVPGVRIVVDSTLAREPRLDVARSMSGLVTVGASRSAGIQRAGRAGRE
GPGAVYRCCSPTDWARAPMAPTPEILTADLTRAALELAAWGVPDGAGLTWLDEPPAPAME
AARTTLEALGLVLGGAITAAGRAVVAVPAEVRPARALLAAWPILGLRRAARMTALLTADL
RPAGADLARLARDLREDGPGQGRGSAWRLEARRLERAAARAVGILDDGGPSSTTGPGAPG
AGEVGSGPAGPNNPAGPADPNNPAGPNNPNNPAGPNNPTDPSGPSGAAEAGSVSAGGGEA
GPSSQPAEPIAGQPAAAGLTPDAVAEHCRDRHLDTEEAIALVAGLAQPQWIARRRGGPPG
AGAQAAYATVAGTGLRLPADSPLADSPWLAVSQVERDGGRDALIRAAAPLTQDMALLLAA
PWLTVEERTLWQEGRLRAERVRRLGAITLETAPAAAPGPRETARAVVDLVTDDGLEALTW
DEEARRLRARLALLHEHLGEPWPSMTDADLVACAETWLAPAAAAVGSSSGRFSLERLDVA
EALRALLPWPQAARLEDLVPERLEVPSGSQLRVDYSQGQPVLAVAVQECFGWQATPRIVE
GRVAVLLHLLSPARRPVAVTEDLASFWAQGYPQVRAELRGRYPKHAWPEDPGTVPPHRGT
RRRST
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggccccacgatcatcctcgaccaccgtcccgccctcggcgggcgacccgatc
gccgccctgctcgcctcaccgcccgatctgcccttcgccgcggccctggagccgctgcgc
gccgcactggccgggccgggccccgccgtcgtggtcaccgcccccgcgggcacgggcaag
accaccctcgcccccgccctggtcgccgatgccctggcccgcgccggcagcaccgggcgg
gtcgtggtcacccagccgcgtcgcatggccgcccgcgcggccgcccgccgcctggccggg
ctcctgggtcaggagctcggggagacgatcggctacgcggtgcgcggggagcggcgctcg
ggcccggacacccgcatcgagatcgtcaccgcggggctgctcctgcgccggctccaggcc
gaccccgagctggcgggcatcggtgccgtcatcctggatgaggctcatgagcgggcgctg
gactccgacctcctcctggcgctgctcctggacgcccgcggcctgcgcgaggatctgcca
ctggtggccatgtccgccaccctggaggccgagcgcctcacggcagtcatgggggcgcgg
gccgtgaccgcccagggcgcagcgcatccagtggaggagcagtgggcgccggggcccggg
cgcctgggggcgcgcggcgtgccccgggagttcctggcccacgtcgcccggacgacggcg
caggccctggaggcccatgagggcgatgccctggtcttcctgcccggggcccgcgaggtc
gaggaggtcgtggcccgccttcgcggcctggtggcccgggaggtcgatgtcctggcgctg
cacggccgcctgcctgccagcgcccaggacgcggcgctgcggccgggggcggggcggcgc
gtggtcgtgtccacgaatgtcgcggagtcctcgctgaccgtccccggggtgcggatcgtc
gtggactccacgcttgcccgcgagccacgcctggatgtggcgcgctcgatgagtgggctg
gtgactgtgggcgcctctcggtcggcaggcattcagcgggcgggccgggccggccgcgag
gggcccggagcggtctaccgctgctgctcgcccacggactgggcgcgcgcccccatggcc
cccaccccggagatcctcaccgcggatctcacgcgcgccgccctggagctggccgcctgg
ggcgtgcccgacggcgccggcctgacctggctcgacgagccccctgccccggccatggag
gcggcgcgcaccaccctggaggcgctggggctggtcctgggcggggccatcaccgcggcg
ggacgggcggtggtggcggttcccgccgaggttcggccggcccgggccctactggcggcc
tggccgatcctggggctccggcgggcggcgcggatgacggcgctgctgaccgccgacctg
cgacccgctggcgccgatctggcccgtctggcgcgcgacctgcgcgaggacgggccgggt
cagggacgcggctcggcctggcggctggaggcgcggcgcctggagcgcgcggcggcccgg
gccgtcggaatcctggacgacggcggccccagcagcactaccgggcccggcgcgcccggg
gccggggaggtcgggtccggccccgccggccccaacaaccccgccggccccgccgacccc
aacaaccccgccggccccaacaaccccaacaaccccgccggccccaacaaccccaccgac
cccagcggccccagcggtgcagccgaggccggctcggtcagtgcgggcggcggagaggcg
ggcccgagctcccagccggccgagcccatcgccggccagcccgccgcggcggggctgact
cccgatgccgtggcggagcactgccgggaccgccacctggacacggaggaggcgatcgcc
ctggtggccggcctggcccaaccgcagtggatcgcccggcgccgcggcggcccaccaggg
gcgggcgcgcaggcggcctacgcgaccgtggccggaacggggctgcggctgccggcggac
tcgccgctggcggactccccgtggctggcggtgtcccaggtcgagcgcgacggcggccgg
gacgcgctgatccgggcggcggccccgctgacccaggacatggccctgctgctcgccgcg
ccctggctgaccgttgaggagcgcacgctctggcaggagggccggctccgggccgagcgc
gtgcgccgactgggcgccatcaccctggagaccgcccccgctgccgcgcccggcccacgg
gagacggcgcgcgccgtcgtcgacctcgtgaccgacgacggactggaggcactgacctgg
gatgaggaggcccggcgcctgcgcgccaggctcgccctgctgcatgagcacctgggcgag
ccctggccatcgatgaccgacgccgacctggtggcctgcgccgagacatggctggccccg
gcggctgcggctgtgggatcgtcgtcggggcgcttcagcctggagcgattggatgtggcc
gaggccctgcgcgcgctcctgccctggccccaggccgcgcgactggaggacctggtgccg
gagcgcctcgaggtcccctcgggctcgcagctgcgcgtggactactcccaggggcagccg
gtgctggccgtggcggtgcaggagtgcttcggctggcaggccaccccgcgcatcgtcgag
ggcagggtggcggtgctcctccacctgctctcccccgcgcgcaggcccgtggccgtcacc
gaggacttggcctccttctgggcgcagggatacccgcaggtccgggccgagctgcggggc
cgctaccccaagcacgcctggcccgaggatcccgggaccgttccaccgcatcgcggcacc
cgtcgtcggtccacctga
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