Actinomyces slackii: NCTC11923_01377
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Entry
NCTC11923_01377 CDS
T06783
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase yjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
asla
Actinomyces slackii
Pathway
asla03420
Nucleotide excision repair
asla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11923_01377 (yjcD)
03430 Mismatch repair
NCTC11923_01377 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asla03400
]
NCTC11923_01377 (yjcD)
Enzymes [BR:
asla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11923_01377 (yjcD)
DNA repair and recombination proteins [BR:
asla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11923_01377 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
NCTC11923_01377 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
VEG74739
UniProt:
A0A448KCS5
LinkDB
All DBs
Position
1:1655540..1657639
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AA seq
699 aa
AA seq
DB search
MSPTAPRPAPDPPITLGPGQAARLLDALDPDQREVAEHLEGPLCVLAGAGTGKTRAITYR
IAHGVASGAYQTTQVLAVTFTSRAAGEMRSRLADLGVPGVQARTFHSAALRQLTYFWPTA
IGGRRPEIQPGKAPLVGAAARRLGLATDRATLRDLAAEVEWAKVTLTLPEDYAQAAIAAG
RTGVAGIEPATVAQVLALYEKAKTERGVIDFEDVLLLQIGILLDREDIASQVRSQYKHFV
VDEYQDVSPLQQRLLDLWLGRRRQLCVVGDVSQTIYSFTGATPDYLTGFTSRYQGARTVR
LTRDYRSTPQVVSLANQVLARSRRGGALRLPTGAVELVAQRPSGPAVRFEAHDDDVSEAQ
GVVTQVQRLRSAGVPLSEIAVLYRTNSQSEVIEQALASAGIGYLVRGGERFFERQEVKRA
MVSILGAARTEKESLTGDLGADVRMVLSREGWSQEPPAQRGAVRERWDSLNAIVALADDL
AQTRGASMEAFHTELRERADVQNAPTVEGVTLSSLHAAKGLEWDAVLLIGACEGLLPISL
AEGAAAIEEERRLLYVGVTRAREHLVISYARARNAGGRASRKPSRFLEGLWPKAEAPGTA
RATGKGRTGAKQAAADFEASADPATLALFEELRAWRAVAAKERSRPAYTVFADATLRDIA
TVKPTSLPQLSLIRGVGAVKLQEYGGQVLAVVRATAPGE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgaccgccccccgccccgccccggacccgccgatcaccctgggccccggccag
gccgcgcgcctcctggacgccctggaccccgaccagcgagaggttgccgagcacctggag
ggccccctgtgcgtcctggccggagccggcaccggcaagacccgcgccatcacctaccgc
atcgcccacggcgtggcctcaggcgcctaccagaccacccaggtcctggccgtgaccttc
acctcccgcgccgcaggggagatgcgctcgcgcctggccgacctgggcgtgcccggcgtc
caggcccgcaccttccactccgcggcgctgcgccagctcacctacttctggcccaccgcc
atcggcgggcgccgccccgagatccagcccggcaaggcgcccctggtcggagccgccgcc
cgccgcctgggcctggccaccgaccgggccaccctgcgggatctggccgccgaggtcgaa
tgggccaaggtcaccctcaccctccccgaggactacgctcaggccgccatcgccgccggc
aggaccggcgtggccgggatcgagcccgcaaccgtcgcccaggtgctggccctctacgag
aaggccaagaccgagcgcggcgtcatcgacttcgaggacgtcctgctcctgcagatcggc
atcctgctggaccgcgaggacatcgcctcccaggtgcgcagccagtacaagcacttcgtg
gtcgacgagtaccaggacgtctcacccctccagcagcgcctgctggacctgtggctgggc
cggcgccgccagctgtgcgtggtgggggacgtctcccagaccatctactccttcaccggg
gccacccccgactacctcaccggcttcaccagccgctaccagggcgcccgcaccgtgcgc
ctgacccgcgactaccgctccaccccccaggtggtctccctggccaaccaggtcctggcc
cgatcccgtcgcggcggcgccctgcgcctgcccaccggcgccgtcgagctggtggcccag
cggcccagcggcccagcggtccgcttcgaggcccatgacgacgacgtctccgaggcccag
ggcgtcgtgacccaggtccagcgcctgcgctcggccggggtgccgctcagcgagatcgcg
gtcctgtaccgcaccaactcccagtccgaggtcatcgagcaggccctggcctcggcaggc
atcggctacctggtgcgcggaggcgagcggttcttcgagcgccaggaggtcaagcgggcc
atggtctccatcctgggagccgcccgcaccgagaaggagtccctgaccggggacctgggg
gccgatgtgcgcatggtcctgtcccgcgagggctggagccaggagccccccgcccagcgc
ggagcggtgcgcgagcgctgggactccctcaacgccatcgtcgccctggccgacgatctg
gcccagacccgcggcgcgagcatggaggccttccacaccgagctgcgcgagagggccgat
gtccagaacgcccccacggtcgagggcgtgaccctgtcctccctccacgcggccaagggc
ctggaatgggacgccgtcctgctcatcggcgcctgcgagggcctgctgccgatctccctg
gccgagggcgccgccgccatcgaggaggagaggcgcctgctctacgtcggggtcacccgc
gcccgcgagcacctggtcatctcctacgcccgagcccgcaacgccggggggcgggcctcg
cgcaagccctcccgcttcctcgagggcctgtggcccaaggccgaggcccccggcaccgcc
agggccaccggcaagggacgcaccggcgccaagcaggccgccgccgacttcgaggccagc
gccgacccggccaccctggccctgttcgaggagctgcgggcctggcgggcggtggcggcc
aaggagcgctcgcggccggcctacacggtcttcgccgacgccaccctgcgcgacatcgcc
acggtcaagcccaccagccttccccagctctccctcatccgcggcgtgggcgccgtcaag
ctccaggagtacggggggcaggtcctggcggtggtgcgcgccaccgccccgggggagtag
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