Actinomyces slackii: NCTC11923_01991
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Entry
NCTC11923_01991 CDS
T06783
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asla
Actinomyces slackii
Pathway
asla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11923_01991 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asla03019
]
NCTC11923_01991 (deaD)
03009 Ribosome biogenesis [BR:
asla03009
]
NCTC11923_01991 (deaD)
Enzymes [BR:
asla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11923_01991 (deaD)
Messenger RNA biogenesis [BR:
asla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11923_01991 (deaD)
Ribosome biogenesis [BR:
asla03009
]
Prokaryotic type
rRNA helicases
NCTC11923_01991 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
VEG75331
UniProt:
A0A448KEI4
LinkDB
All DBs
Position
1:2408599..2411193
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AA seq
864 aa
AA seq
DB search
MSTPNEPLSLDALFATELSGDVAPPPAARAQESPEDFVAPVASDTPEDPVDIEHEDEEDD
VEHDVPEADPEDEEDDPEQDEDEEIDEEQVDGHAPFIDQDDEDDDDPAEARDGVKDAADL
ADPADPVDAVTFADLGLPADLLRAVTDMGYQTPTAIQKEAIPVLLAGRDVVGVAQTGTGK
TAAFGLPLLDAVDARDGSVQALVLAPTRELALQSAEAITEMASRSRGLDVVAVYGGAPYG
PQIGALKSGAQVVVGTPGRVIDLIDKGALRLEDVRYFVLDEADEMLRMGFAEDVETIAES
LPVERRTALFSATMPPAIQAVARQHLHEPVQVEVSRPSSTVSTVHQTYAVVPFRHKIGAV
SRVLAVTDAQAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRGGTL
DVLVATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRTGEAVTFLTPKEKGK
LRQIERLTGTRLEEITLPSPADVSEHRAARLMARAASRHARGRLGVYLPLVESTAAELGV
DAQELAATLLALAVGDEGPRRREDREDSHGEARRPRREENLDEEGAFVSASFEGGREDRR
RGQRPDGKRGAARGGRRDHEGPGTVYRVEVGHRDRVQPGAIVGALANEGGISGSDIGKID
ILQSFSLVTIHTDLSPDQLETMGRATYAGRELRIRPDEGPGHGWSGPNGDQQRGGRGGFR
ADRSERSERGGRWEDRDSRGGRRWEDRDFRGGRWEDRDSRGGRGGFRADRSERSERGGRW
EDRDSRGGRGGFRADRSERSERGGRWESRDSRGGRRWEDRDFRGGRGDQRGRDGGGYRSG
RDDRGSGRFGGNRGGGYRGNRDAR
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgagcacccccaacgagcccttgagccttgacgccctgttcgccaccgagctctccggc
gatgtggctccgccgcccgctgcccgtgcgcaggagtctcctgaggacttcgtcgccccc
gtggcctccgacacccccgaggatcccgtggacatcgagcacgaggatgaggaggacgac
gtcgagcacgatgtgcccgaggccgatcctgaggatgaggaggacgatcccgagcaggac
gaggatgaggagatcgacgaggagcaggtcgatggccacgcgcctttcatcgaccaggac
gatgaggacgacgatgaccctgccgaggcccgggacggggtcaaggacgccgctgacctt
gcggaccccgcagaccccgtggacgccgtgaccttcgccgacctgggcctgcccgcggac
ctgctcagggctgtcacggacatgggctaccagacccccaccgccatccagaaggaggcc
atcccggtgctcctggccggccgcgatgtggtgggggtggcccagaccggcactggcaag
accgccgccttcggactgcccctgctcgatgccgtcgacgcgcgtgacggctccgtccag
gcgctcgttctggcccccacgcgcgagctggcccttcagagcgccgaggcgatcaccgag
atggcctcgcgctcgcgcggcctggatgtggtggccgtctacggcggcgcgccctacggc
cctcagatcggtgcgctgaagtcgggcgcccaggtcgtggtgggaacacccggccgcgtc
atcgatctcatcgacaagggggccctgcgcctggaggacgttcgctacttcgtcctggat
gaggccgatgagatgctgcgcatgggcttcgccgaggatgtggagaccatcgccgagtcc
cttcccgtcgagcgccgcaccgccctgttctcggcgaccatgccccccgccatccaggcc
gtggcccgccagcacctccatgagccggtccaggtcgaggtctcccgtccctcctccacc
gtctccaccgtgcaccagacctatgcggtggtccccttccgccacaagatcggcgcggtc
tcccgtgtgctggctgtcaccgacgcccaggcggcgatcgtgttcgtgcgcaccaagtcc
acggccgaggacgtggccatcgagttggcgggacggggcatccaggccgccgcgatctcc
ggggatgtgccccagcgcgagcgcgagcgcctggtcgagcgcctgcgcggcggcaccctg
gatgtgctcgtggccacggatgtggccgcgcgcgggctcgatgtggaccgcatcggcctg
gtggtcaacttcgatgtcccgcgggaggccgaggcctacgtgcaccgcatcgggcgcacc
gggcgcgccgggcgcaccggtgaggccgtgaccttcctgactcccaaggagaagggcaag
ctccgccagatcgagcgcctgaccggcacccggctggaggagatcaccctgccctccccc
gccgatgtctccgagcaccgcgccgccaggctcatggcccgggccgcctcccgccacgct
cgtggccgcctgggggtctatctgcccctggtggagtccaccgcggccgagctgggggtt
gacgcccaggagctggccgccaccctgctggccctggccgtgggcgatgaggggccgcgc
cgtcgggaggaccgcgaggacagccacggcgaggctcgccggccccggcgcgaggagaac
ctggatgaggagggcgccttcgtgtccgcctccttcgagggcgggcgcgaggaccgccgt
cggggccagcgccccgacggcaagcgcggcgccgcccgcggggggcgccgcgaccacgag
ggccccgggaccgtctaccgggtggaggtcgggcaccgtgaccgtgtccagcccggcgcg
attgtgggagcgctggccaatgagggcgggatctccgggtcggatatcggcaagatcgac
atcctccagtccttctccctggtgaccatccacaccgacctcagcccggatcagctcgag
acgatgggccgggccacctatgcgggccgcgagctgcgcatccgccccgatgagggaccg
ggccacggctggtccggcccgaacggcgaccagcagcgcggggggcgcggcggcttcagg
gccgaccgctccgagcgctccgagcgcggcggacgctgggaggaccgagactcccgcggc
gggcgccgctgggaggaccgggacttccgcggcggacgctgggaggaccgggactcccgt
ggcgggcgcggcggcttcagggccgaccgctccgagcgctccgagcgcggcggacgctgg
gaggaccgggactcccgcggcgggcgcggcggcttcagggccgaccgctccgagcgctcc
gagcgcggcggacgctgggagagccgggactcccgcggcgggcgccgctgggaggaccgg
gacttccgcggcggacgcggggaccagcggggccgcgatggcggaggctaccgctcgggc
agggatgaccgtggctcgggccgcttcggcggcaaccggggcgggggctaccggggcaac
cgcgacgcccgctga
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