Candidatus Arthromitus sp. SFB-mouse-Yit: MOUSESFB_1058
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Entry
MOUSESFB_1058 CDS
T01857
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
asm
Candidatus Arthromitus sp. SFB-mouse-Yit
Brite
KEGG Orthology (KO) [BR:
asm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asm03400
]
MOUSESFB_1058 (sbcC)
DNA repair and recombination proteins [BR:
asm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MOUSESFB_1058 (sbcC)
Archaeal homologous recombinant proteins
MOUSESFB_1058 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_27
PhoH
AAA_16
AAA_22
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BAK80200
LinkDB
All DBs
Position
complement(1195021..1198101)
Genome browser
AA seq
1026 aa
AA seq
DB search
MIPIKLTVQAFGPYKGKETIDFRKFFDNRLFLITGNTGSGKTMIFDAICYALFGDVSGQY
REIDTLRSQFASREDITYVKFEFSHRNKDYIITRSPEQFKISRGKEILQRAKAEILIGNE
VVSGIKNVNQEIKNILGIDHSQFKQIVMIAQGEFRDLVSADSRNRESIYRKIFNTMEFEN
IQNTLKERASEYEKKFDNFDQRIRGLLDSINSIKLISYEDLTINQVLDVLSKEVEIYDNK
LKELKPKKEYYKNEILRNNNFFDSFNSLIARKNELSSFDISSLKDEGNFLDKVKKTFLIR
DKEKVLENFKDTRDGYEKEIEKIIFDLNFHKNNLDVLNKEFEETKSYDIEIENLKSKIID
LESLKNTVEEKQKHEFKIKDLEKELLDLDDNKESIKKELEIFDRRYNQILSFSIEHKDIK
EKILYIESDLLNLEGIKEGLLKYESELKIYEKLNIECEKCESKYNKIFDLYGNKTRELSL
SEDIYFRNQAGFLANKLEDGCPCIVCGSTIHPNKANLVDVSVNEESLKELRNEILMIKKE
LEETVTLKINLNKDVKSKEDRIREIYEDVLKKDKTDEFISFKEFELCEDTISRVKLKVLS
LRNSLNNSRDINNKLVELQEEITNIESKIKEGKLNFDQIEKDYIQKQSNISALKIILNDK
TSRLLKYNISSINDYLDTLEQTNNYLKSLINKREVINSNITKCNNEILKFQSKFDIKNRD
IEDLNFRIKTSYEIFMESLKENGFKDIDEYKKFKISESEFNERTKFIEDKREEFRNINLK
IIQLEKDISSSPYKTKEELSTHLKDLNDKLKEVEELEIKYCQNKSLLENVYGSILSINKD
ISNFENLRINLNELNKIANGINKYKISFERYILGIYFKEIIYTANIRLLKLTNGRFLFRH
LKENTDMRSQQGLEISVFDNRTSQERKVNAISGGESFQASLALALGLSDVIQRYSGGVSI
DTLFIDEGFGSLDSDSLQNALECLIEANDESKLIGIISHVQELKDFIRSKIEVIDSSNGS
RIKTDL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgattccaataaagttaactgtacaagcatttggaccatataaaggaaaagaaacaata
gattttaggaaattttttgataataggttatttttgattactgggaatacaggtagtggg
aaaactatgatatttgatgcaatatgctatgctttattcggagatgtaagtggtcaatat
agagagattgatacactaagaagccaatttgcgagtagagaggatattacatatgttaag
tttgaattttctcatagaaataaagattatataataacgagatcacctgaacaatttaaa
atttcacgaggaaaagagattttacaaagagctaaggcagaaattttaataggtaatgaa
gtagtaagtgggattaagaatgttaatcaagaaatcaaaaatattttaggtattgatcat
tcacaatttaaacaaattgttatgattgctcaaggtgaatttagagaccttgtatctgca
gattcgaggaatagggaaagtatatacagaaagatatttaatacgatggagtttgaaaat
attcaaaatactttaaaagagagagcatctgaatatgaaaaaaagtttgataattttgat
caaaggataagaggacttttggattcaatcaattctataaaattaatatcttatgaagat
ttaacaataaatcaggtattagacgttttaagtaaagaagtagaaatttatgacaataaa
ttaaaggaattaaaacctaagaaagaatattacaaaaatgaaattttacgtaataataat
ttttttgatagttttaattctttgatagctagaaaaaatgagttatcatcatttgatatt
agttcattaaaggatgagggaaattttttagataaggttaaaaaaacatttttaataaga
gataaagagaaagttttagaaaattttaaagatacacgagacggatatgaaaaagagatt
gagaaaataatttttgatctcaatttccataaaaataatctagatgttttaaataaagag
tttgaagaaactaaatcttatgatattgagattgaaaatcttaaaagtaaaataatagat
cttgaatctttaaagaatactgtagaagagaaacaaaaacatgaatttaaaattaaagat
ttagagaaagaattgttagatcttgatgataacaaggaatctataaaaaaagaattagaa
atatttgatcgtaggtataatcaaattttaagttttagtatagagcataaggatataaaa
gagaaaattttatacatagaaagtgatttattaaatttagaaggaattaaagaaggactt
cttaagtatgagagtgaacttaagatttatgaaaaattgaatattgaatgtgaaaaatgt
gaaagtaagtataataagatttttgacttatatggaaataagacaagagaactttcatta
agcgaagatatttattttagaaatcaggctggattccttgcgaataaacttgaagatgga
tgtccttgtattgtttgtggatcaacgattcatcctaataaagcaaatctcgttgatgtc
agcgtaaatgaagaatcattgaaagaattaaggaatgaaattttaatgataaaaaaagaa
cttgaggagacagtaactctaaaaatcaacttaaacaaggatgttaaatctaaagaagat
aggataagagaaatatatgaggacgttttaaagaaggataaaactgatgagtttataagt
ttcaaagagtttgaattatgtgaggatactatatcaagagttaagttaaaagtgctttca
ttgagaaattcactgaataatagtagagatataaataataagttagttgaacttcaagaa
gaaattacaaatatagaaagtaaaatcaaagagggaaaattaaattttgatcagattgaa
aaagattatatacaaaagcagagtaatatatcagcactaaaaataattttaaatgataaa
acatcaagattattgaagtataatatttcatcaataaatgattatctagatacattagaa
caaacaaacaactatttgaaaagtttaataaacaagagggaagtcataaattcaaatata
actaaatgtaataatgagatattaaaatttcaatctaaatttgatataaagaacagagac
atagaagatttaaattttagaattaagacaagttatgaaatatttatggagtcacttaaa
gaaaatggatttaaggatatagatgaatataaaaaatttaagatatcagagagtgaattt
aatgagagaactaaatttatagaagataaaagagaagagtttagaaatattaatttaaaa
ataatacaactagagaaagacatatcatcttcaccatataaaactaaagaagagttatca
acacatttaaaagatttgaatgataaattaaaagaagttgaggaattggagataaaatat
tgtcagaataaatctttacttgaaaatgtatatggaagcattttatcaataaataaagat
atatcaaattttgaaaatttaaggataaatttaaacgagttaaacaaaattgcaaatgga
attaataaatataaaattagttttgagagatacatactgggtatttatttcaaagagata
atatataccgctaatattagacttttaaaattaacaaatggaagatttttatttagacat
ttaaaagagaatacagatatgagatctcaacagggtttagagataagtgtatttgataat
aggacatctcaagagaggaaagttaatgcaatttctgggggagaaagttttcaagcatca
cttgctttggctttaggattatcagatgttatacaaagatattcgggaggagtttcaata
gatactttatttattgatgagggatttggatctttagattctgattcactacaaaatgct
cttgagtgtttaatcgaagctaatgatgagtcaaaacttattggaataatttcacacgtt
caggaactaaaagattttataagatctaaaatagaagtgatagattcaagcaatggtagt
agaataaaaacggatctatag
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