Alligator sinensis (Chinese alligator): 102368515
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Entry
102368515 CDS
T02922
Symbol
COL17A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102368515 (COL17A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
102368515
NCBI-ProteinID:
XP_006021359
UniProt:
A0A1U7RNN5
LinkDB
All DBs
Position
Unknown
AA seq
1507 aa
AA seq
DB search
MDSLTKKTKQDGSEVTERFITETVTTRLTSLPPKGGSSSGIKTSAHGGGSGVEKRSYTHG
SSYVTSSGSGRMNSSSSSSGYRQAQSPSSTLTKSPASTFERKTYVTRHATYEGSSSANSS
PEFPRKELASSATRGRSQSRESEIRVRLQSASPSTRWTELDDVKRLVKGSRSASCSPTRS
PSSTLPIPKKAVMETKMVTESSQSVSGTYDTTILNAALPSYMWSSTLPAGTSLGGYHNNM
AQSSSLINAMSHSTGSVFGVPNNLAPSNPSLNAGLSTSSTVFGVQNNLVPPPAAMTYGAT
TASTVYGVKNSSSQSNAAATTGVATATAGSRLNSQSDDVLRKDCKFLLLEKENIPAKKEM
ELLIMTKDSGKVFTASSTGLNGGFLEDTLKKEKHGVSSSYAADSYLKSEGNGGLKSVSTK
DKATYAEIHGDGGGGGIGAAPAWCPCGSCCSWWKWLLGLLLTWLLLLGLLFGLIALAEEV
RKLKARVAALEESKLSYMTENAILQYRQGLGTSAAESQHGLNDYIWMAVKGRLDEEKKNG
FWRGEPGPKGDRGMPGPKGDQGLPGMPGLIGHPGPEGPKGQKGSVGEPGMEGPMGQRGRE
GLPGPRGEPGPPGFGEKGDRGSVGEPGLPGPPGAPGSVGPKGMTGSPGPHGPPGPPGLQG
FRGEAGLPGPKGDKGAAGPPGPKGDQGEKGPRGLTGEQGARGLPGLAGEPGAKGSVGPAG
PDGLQGPRGEQGLMGLPGIRGPPGPPGDSGQPGLTGPPGPPGLPGNPGQPGIKGEPGAPG
RIINGGDSSTIALPGPAGPPGPAGPQGPPGAPGPAGPAGLPGQQGPRGEAGITSEAFVET
IKAEVASQVLTSAGERFGLPGPPGPPGPPGASIQGPAGPRGPPGEGLPGPRGPPGEPGSF
VPTSETFFSGPPGPPGPKGEQGERGPRGFTGEPGQPGLPGYSSGVDIGMQGPPGPPGPKG
DKGDAGIPGAPGIPGLGYVDEYSRQGQGLPGPPGPPGPPGPVGGSAQEVQQYVAEYLQSD
SMRHYLIGPQGPPGPPGQPGMIITGSGDTLDYAELAQRVMAYIQSYSYESTALSTLFKAS
FSYEDLLAMLQKKEVRQYLIGLQGSSGENSLAVSLDYDDLARRVISYLTNSGISIGLPGP
PGPPGPPGLSGTSYDEIAAWLRDSKFNGIVGPPGPPGPPGLQGPAGRSGSSLEEVVSYLQ
SIGYTSNSGLPGPPGPPGPPGPPTFSGTDIVSYASVAQNDEFRSELIKFITSDGIRSYIS
GPPGPPGPRGPPGPKGDSGIIAGSVSTSYRESLGTDGSYGGSLGTGGAYGGSLGTGGSYD
RSLAAGGSRGGSMGSDGSYGSSMGGAGSYGVLMHAEGSQEGSLRAGGSQGMSSSRGSYSE
SFTGPLDFNELALRVSESIHSRGLLQDLMTYSVQGPPGPPGPPGVSKVFASYGNVTADLM
DFFRTYGTIPGPPGAKGDMGHPGPKGERGPMGPPGRQGQGDRRARKERRENKSTLAEGKG
EALGVGV
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atggattccctaacaaagaaaaccaaacaagacggatctgaagtcaccgaaagatttatt
acggagactgtaaccacaagactcacatccttaccaccaaaaggagggagcagcagtggg
atcaaaacatcagcccacggcggagggagcggagtagaaaagaggagttacacccatggc
agcagctatgtgacttcaagtggaagtggtagaatgaattcttcctcctcatcctccggc
tacaggcaggcacagtctcccagctctactctcaccaaatcacctgcctcaacctttgaa
agaaaaacttatgtcactcgccatgcaacatatgaagggagctccagtgcaaattcatct
ccagaattccctagaaaggagttggcatcttccgcaactagaggacgaagtcaaagccga
gagagtgaaatccgagtacggttacagagcgcttctccctcgaccagatggaccgaactg
gatgatgtgaagcgtctagtgaaaggaagtcgctcggccagctgcagtcccactcgttca
ccatccagcactctaccgatccccaagaaagctgtgatggagacgaagatggtaacagag
agctcccagtcagtgtcagggacctatgacacaactatcctgaatgctgccctcccctca
tacatgtggtcctccaccctgcctgcagggacttcccttggtggctaccataacaacatg
gcccagagctcttccctaatcaacgccatgtcccattctacaggatcagtgtttggagtc
cctaataacctggctcccagcaatcccagtctgaatgcagggctgagcacatcctcaaca
gtgtttggtgttcaaaacaacctggttccaccccctgcagccatgacctacggtgcaacc
acagcctctacagtatatggtgtgaagaacagttcttcccagagcaatgctgcagctact
actggtgtggctactgcaactgctggcagcaggctgaattcccagagtgatgacgttctg
cgcaaagactgcaagttcctgctcttggagaaggagaatatccctgccaagaaggagatg
gagctcttgatcatgaccaaggacagtgggaaggtctttactgcttctagcactgggctc
aatggaggcttcttagaagacaccttgaagaaagaaaagcatggtgtttcttcttcttat
gctgcagactcctacctgaaatctgaaggaaatggaggtctaaaatcagtgtcaacaaag
gacaaagcaacctatgctgaaatacatggtgatggtggagggggagggattggagcagct
ccagcctggtgtccctgtggttcctgttgtagctggtggaagtggctcctaggtctgctc
ctcacctggttgcttctccttggattgctctttggactcattgcgttggcggaagaagtg
aggaagctgaaagctcgtgtggcagccctggaagaaagcaaattgagttacatgacagaa
aatgctattttgcagtacaggcaggggctaggtacaagcgctgctgaatctcaacatggt
cttaatgattacatctggatggctgtgaagggtagactggatgaagaaaagaaaaatggc
ttctggagaggggaacctggcccaaaaggtgataggggaatgccaggtcccaaaggagac
caaggacttcctggtatgccaggtcttattggacatccaggaccagaagggccgaaggga
cagaaaggcagtgtgggtgaacctggcatggaaggacccatggggcaaagagggcgagaa
gggcttccagggcctcgtggggaacctggaccacctggatttggcgagaaaggagacaga
ggttctgttggtgagccaggacttccagggccacctggtgccccaggttctgttggtccc
aaaggtatgacaggttctccaggcccacatggtcctccaggtcctccaggcctccaggga
tttagaggtgaagcaggtctcccaggtcctaaaggtgacaaaggagctgcaggaccacct
ggacccaaaggtgatcaaggtgaaaaaggtcctcgtggtctgacaggtgaacaaggagcc
agaggattgcctggtcttgcaggagaaccaggagctaaaggttcagtaggtccagctggt
cctgatggactccaaggcccaagaggtgaacaaggtctcatgggattgccaggaatacga
ggcccacctggaccccctggagattcaggacagccaggtctcacaggacctccaggacct
ccaggccttccaggcaacccaggtcaaccaggaattaaaggtgaacctggagctccaggc
agaattatcaatggaggggattcctcaactattgcccttcctggccccgcagggcctcca
ggcccagctggaccccaaggcccaccaggtgccccaggtcctgctggaccagctggtctc
cctggacagcaaggtccacgtggtgaggcagggatcacaagtgaagcctttgtggaaact
atcaaagcagaagttgcatctcaagtattgacaagtgcaggagaacgatttgggcttccc
ggtcctccaggccctcctggccccccaggtgcttctattcagggaccagctggacctcgc
ggtcctccaggagaaggacttcccggcccacggggcccaccaggagaaccagggtctttt
gtgcccacatcagaaacattcttctcaggcccacctggcccaccaggaccaaagggagaa
cagggtgaacgaggaccacgtggattcacaggtgaaccaggtcagcctggccttccagga
tactcttcaggtgtggatattggtatgcagggacctccgggcccacctggacccaaagga
gacaaaggtgacgctggtatcccaggagctccgggcatccctggactgggttatgtagat
gaatattcaagacaaggtcaaggtcttcctggtcctccgggcccaccaggtcccccaggc
cctgttggaggctcagcgcaagaggttcaacagtatgtcgccgagtacctgcagagtgac
agcatgaggcattatctgattggacctcagggcccaccgggacccccaggacaaccggga
atgatcatcactggtagtggagacaccttggactatgcagagctggcccagcgggtcatg
gcctacatacaaagttacagctacgagtccactgctttgtccaccttattcaaagcttcc
ttttcttatgaagatctcctggccatgctgcagaaaaaagaagttcgccagtatctaatt
ggacttcagggttcctcaggagaaaacagcttggcagtgtccctggactatgatgatttg
gccaggcgggttatcagctacttgacaaactctgggatcagcattgggcttcctggacca
ccaggcccaccagggcccccaggattgtctggcacctcttatgatgagattgcggcttgg
ctccgagactccaagtttaatggcatcgttggacctccaggccccccaggccctccagga
cttcaagggcccgcaggccgctcgggcagctcgctcgaggaagtcgtcagctacctacaa
agcataggatacacctccaattctggactcccgggaccaccaggacctccaggacccccg
ggtcccccgactttctctgggactgacatcgtttcctatgctagtgttgctcagaatgat
gaattcaggagtgagctgatcaaattcataaccagtgacggcattcgaagctacatctcc
gggcctcctgggcctccggggccgcggggaccacctgggccaaaaggagatagcggcatc
atagctgggtctgtatctacatcatacagggaatccctgggcactgatggatcatatgga
ggatccttgggcaccggtggagcatacggaggatccctgggtacaggtggatcctatgac
aggtccctggctgctggaggatcacgtggtggctcgatgggcagtgatgggtcgtatggc
agttcaatgggcggtgctgggtcatacggtgtcttgatgcatgctgaaggatcacaagaa
gggtccctgagagcaggaggatcgcagggaatgtcgagctcgagagggtcctacagcgag
tccttcactgggccactggatttcaacgagctggcgctgcgggtgtccgagagcatccac
agtcgaggtctcctccaggacctgatgacttactctgtgcaggggccaccaggccccccg
gggccacctggagtcagcaaggtgtttgcatcctatggcaacgtcactgcagacctaatg
gacttcttcaggacttacggtaccatcccaggcccgcctggtgcaaagggagacatgggt
cacccaggtcccaaaggtgaacgtggaccgatggggcctccaggacgccagggccaaggg
gaccgaagggcgagaaaggagagaagggagaacaagtctacgttggcagaaggaaaagga
gaagcgttgggagtcggggtctga
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