Alligator sinensis (Chinese alligator): 102370190
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Entry
102370190 CDS
T02922
Symbol
SLX4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
102370190 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asn04121
]
102370190 (SLX4)
03400 DNA repair and recombination proteins [BR:
asn03400
]
102370190 (SLX4)
Ubiquitin system [BR:
asn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
102370190 (SLX4)
DNA repair and recombination proteins [BR:
asn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
102370190 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
Motif
Other DBs
NCBI-GeneID:
102370190
NCBI-ProteinID:
XP_025072013
UniProt:
A0A3Q0HNE6
LinkDB
All DBs
Position
Unknown
AA seq
1874 aa
AA seq
DB search
MDELDDDFKELCANLLSRVNKKRGDAERERKVLNRPRNMATRSRLKKTKPAAKSQSQPSM
MMTWPECLDPHRQALTPKKEGEPLICGSKGTALEDGCGGHLPAILLNATAANCNQNSLAD
CVLNGSSQTTSSFPAAGEPEASVSSPSKTLLVSGSRVRVTELVLERMQQFKRVAPEQLKH
TSDKSLLEPVADEKIPDANQEKNELGNGVNPDLPMMEQDIALALTVQQEFKQEVPRSLEE
SGLFFCQICQKDLSAMNSTRREQHVNRCLDETEKSQVPSSSISRVPECPICGKQFQIPKS
RASHLKHCAVKMQVPPQLLLQAVKLQASSLSERLPPAPSTQVSRSKRKDGSKEQAKKKPK
MSKAETVDEDVLVAMAMSRSLQEHEKQKQAESVTGGKLESALPIKWKPGSKKKSRKKLPL
APPPLLLQDPETSCKQIQDRVAMLLTEEVEFSSTPPLXXXXILEDEPEKTEWLLPLPKDK
HCLLWEFSALTGPCDPETFYTAGLTPPILPCKPVQSQKSETVFSLMGSDQPQLIQQLPVI
SHLAPAELGNKLSDEPQTGPGEDSPSPSCKDVQILQDLIELAGEGLTLTQWNHEVHLSHT
EEQSRKESAPTDIPLSGFVPPYTGKRCQRSSHHRPLLQSLAFDFSGMVNNPHLSDIQFQV
DSGEVLYAHMFVLYARCPRAVEMAHNEGFLVEEDGNLQIRRVLLSEVTAEATYAFLRYLY
SADSNIHPHVLSDVRILAARFSVSELIAICGSSPGENQEPSGVDSGEELFSVGDDEDCEN
RAENFQELLKSMWIDEDEEEIALLKPEGEEEEDHEKVDEQELEEIYEFAATQRKMAQDKP
QEEECTEKSIYSESEKAQDMNQQVDDKGGKVFESSSTCSKIKEWKGSINLGRSRCDLPTQ
EKKIQGPDRCEGMNVTQITTVHCQDESCKCSDNAMSCSAFFGERRTTRTPRVSRSYQASQ
NEEEEDPWEKLFPSHQHNVALDVSYEHMFSATQGNYCDPASLNEDIKDPGETNSEKCVEI
NNSPICHQPQKGLESGKSSFCHSPLIKPCTPLFPAIGSSPLSAKLNQTLSRVYTGIHPIS
TPIRDLSHDDVPFYKASEQSVASRHENIKRRVFPDRSPCIHLNKKKSLSPSSSQILKTQD
ATSHMNKEPDIIVLSDSDEEIELKQTKEESDSGSSLRETEISRKLDYICKKVEQDPKVPK
SEPVSVVDKEVHQRLSQVSLGIQNEVHSNAVAEVLPETHVNSWAGTCVXXXESSSMDASW
LGPGTPPLSKSRNCSTQTQVSSMRNLNHQGSTHKTEVLVVDNNSHKPSRTIISSPEPTSG
GLPVTLSEKPFHLDNSVSKRNSSGSQLGQCSKDFLPISPVPTSPLSPNCASVKEKSSESP
SLARQVPPCHKQSLANKTDISVVEVEDSEEEKDATPFSPSSNFLLGDDPPVPVDDAFWDV
EYLSPIRETSKEPEKSDCANNSTTNSKSDPKEEQWKTPTRLLEVRGSTPLRGSPFDTRKL
LSCDKKSPVETRPSVGSRLSFLDSKVWDSWNGDEDDLPEVIPLTQRLSAAAAAQNTELLK
TPQPVCPKKNLPPKVPITPMPEYSIMETPELKKELNRFGVRPLPKHQMVLKLKEIFQYTH
QVMESDSEDEISSSQPRLWKAIAKHCSPSEADGTAVRTKSSKASSGASKQKMSILVPSLP
VLGSSDDNLMGPSTTSCAAAKMTAETKTHAGDASRQNEVTLSLAGSPVKGSLAISTDEQM
LLASHESTTSSGDGTDHSFGSQSSSANEFETCALALEEDDNEGVPASQTATQDADKQEAV
RRYIHSNPALYRRILFYEPLELAELQAELKQNGIKIGLGKLLDFLDAHCITFTTAGARKE
KQQHRGKKKRGKRY
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggatgaactagatgatgattttaaggaactttgtgccaacctgttgagtagggtgaac
aaaaagagaggagatgctgagagggagaggaaggttctgaacaggccaaggaacatggca
acaaggagtaggttaaaaaagaccaagccagcagctaagagccaaagccaaccaagcatg
atgatgacctggccagaatgcttggacccccacaggcaggcactaacacccaaaaaggaa
ggtgaacctctgatctgtggaagtaaagggactgctttagaagatggatgtggaggccat
ctccccgccattctgttgaatgctacagcagctaactgtaaccagaacagcctggcagac
tgtgtcctgaatggcagctcccaaacaacatcatcctttcctgctgcaggagaaccagaa
gcctcagtctcatccccttcaaagacattgctggtttcaggatccagggtccgggtaaca
gagttagtgttggaaaggatgcagcagtttaagcgagtagctccagaacaactgaaacac
acttctgacaagagcttgctagagcctgtagctgatgagaagatccctgatgcaaaccag
gagaagaatgagctagggaatggagtcaacccagatctgccaatgatggaacaagatatt
gctctggcattgactgtccagcaggagttcaaacaggaagttcctagaagtctggaagag
tcaggattatttttttgtcaaatctgtcagaaggacctctcagccatgaactcaacacga
cgagagcagcatgttaacaggtgtctagatgagacggagaaatcacaggtgccctcctcc
agtatctcacgtgtccctgagtgtcccatctgtgggaagcaattccagatacccaaaagt
cgagccagtcacttgaaacactgtgctgtcaagatgcaggtccctccccagctgcttctc
caggcagtgaagttgcaagcttcatccctcagtgagaggcttcctccagcacccagcact
caagtcagcaggtcaaagagaaaagacggctccaaagagcaggcaaaaaaaaagccaaag
atgtccaaggcagaaactgtggatgaggacgtgctggttgccatggcaatgtcccgatct
ctgcaggagcatgaaaagcagaaacaagcagaatctgtaacaggtggtaaactggagagt
gctctgccaatcaagtggaagccaggatcaaagaaaaaaagtcgtaagaaactccccctt
gcacctccgccattgttacttcaagatccagaaacatcctgtaaacagattcaagaccgg
gtggccatgctgctcactgaggaggtagagttctccagtacccctccactnnnnnnnnnn
nngattctggaggatgagccagagaaaacagagtggcttctgccattgcctaaagataag
cactgccttttgtgggagtttagtgctttgactggaccctgtgaccctgaaaccttctac
acagcaggattaacccctccaattttaccttgtaaacctgtgcagagtcagaagtcagag
actgttttttcattgatgggatctgaccaaccacagctaatccaacaactgcctgtcatc
agccatcttgctcctgcagaacttggaaacaagctttctgatgaacctcaaactggcccg
ggtgaggacagccccagccccagctgcaaggatgttcagattctgcaggacttgattgag
ctggctggggaaggactcactctcacccagtggaaccatgaagttcacctctcccataca
gaggagcaatcaaggaaagaatcagcgcccacagatattccactcagtggctttgtccct
ccatacacaggaaagaggtgccagagaagcagccatcacagacccttgctccagtcactg
gcttttgattttagtggaatggtcaacaatccccatctaagtgacatccagttccaggtc
gactctggggaagttctttatgcccatatgtttgtgctatatgcacggtgcccacgggca
gtggaaatggctcacaacgaaggttttttagtggaagaagatggaaatttgcagatccgc
cgagtgctactgagtgaagtgacagcagaggcaacgtatgcatttctacggtacctctat
tctgctgattctaatatccatccccatgtgctctctgatgtgaggattcttgcagccagg
tttagtgtaagtgaactgattgctatatgcggaagcagccctggagagaaccaggaacca
tctggggtggattcaggagaggagcttttctctgtgggggatgatgaggattgtgagaat
agagctgagaacttccaggagctcttgaagtcaatgtggatagatgaagatgaggaagaa
atagctttgctgaaaccagaaggtgaagaggaggaagaccatgagaaagtggatgaacag
gaacttgaggaaatctatgagtttgctgctacacagcgaaaaatggctcaagacaagcca
caggaggaagaatgcacagagaaaagcatttacagtgaatcagagaaggcccaagacatg
aatcaacaggtggatgacaaaggggggaaggtatttgaatcttcctcaacatgtagcaag
attaaagaatggaagggaagtattaatctgggaagatctaggtgtgatttacctacgcaa
gaaaagaaaatccaaggtccagataggtgtgaaggcatgaatgttacacagatcactaca
gtgcactgccaggatgagtcttgtaagtgcagtgataatgccatgtcctgcagtgcattc
tttggtgaaagacggaccactagaacacccagagtttccagatcatatcaggcttcacaa
aatgaagaggaggaagatccctgggaaaagctgttccctagtcatcaacacaatgtagcc
cttgatgtaagttatgagcacatgttttctgcaacccagggaaactattgtgatcctgcc
tcattgaatgaagatatcaaagaccctggagagaccaacagtgagaaatgtgttgaaatt
aataactcaccaatttgccatcagccacagaaaggccttgagtcgggcaagagcagtttc
tgtcacagtcctcttattaagccatgcacacctctttttcctgctattggttcatcccct
ttatctgcaaaattaaatcagactttatccagagtatatacaggcattcatcctatatca
acaccaataagagatctctcacatgatgatgtgcccttctacaaagccagtgagcagagt
gttgcttcaagacatgagaacataaagagaagagtttttccagacagatctccctgcatt
cacttaaacaagaaaaagtctctctcaccatcctcatcacagattctcaaaactcaggat
gccacatctcacatgaacaaagaacctgatattattgttttgtcagattctgatgaagaa
attgaattaaaacaaacaaaagaggaatcagattctggatcttctttgagggaaacagaa
atttctaggaaattggattatatctgtaaaaaagtagagcaagatcccaaggtgccaaaa
tctgaacctgtatcagttgttgacaaggaagtacatcagaggctgtctcaagtctcactt
ggaattcagaatgaggtgcatagtaatgctgttgcagaggtgttgccagagacgcatgtg
aacagctgggcaggtacctgtgtnnnnnnnnnngagagttctagcatggatgcatcatgg
ctggggccaggcacgcctccgttgagcaaaagcagaaactgctcgacacagacccaagtt
tcaagtatgagaaatttgaatcatcagggatccacgcacaaaactgaagttttagtggta
gataataatagccataagccttctaggaccatcataagcagtcctgaaccaacttcaggt
gggttgccagtgactttgtcagaaaaacctttccatctggacaactcagtcagcaaaagg
aactcttccggcagccagttgggtcagtgttcaaaagactttctgcccatttctcctgtg
cctacaagtccactctcccctaactgtgctagtgtaaaagaaaagtcttcagaaagccct
tctttagccagacaagtgcctccatgccataagcagtctttggcaaataaaacagacatt
agtgtggttgaggtagaggacagtgaggaagaaaaagatgcaactccattttcaccaagt
agcaacttcttgctgggtgatgatcccccagtcccagttgatgatgccttctgggatgtt
gaatatctgtcaccaatcagagagaccagcaaagagcctgagaagtctgattgtgcaaat
aacagcacaaccaacagtaaaagtgaccctaaagaggaacagtggaaaaccccaacaaga
ctcctggaagtcagaggtagtacccctcttagagggagtccttttgacacacgaaaactt
ttgtcctgtgacaaaaagagtcctgttgagacacggccttcagtgggtagtaggttaagc
tttttggattccaaagtctgggacagttggaatggagacgaagatgatctcccagaggta
attcctctcacacagaggttgtcagctgcagctgctgcccagaacacagagctactaaag
actcctcagcctgtctgcccaaagaagaacctgcctcccaaggttccaataacaccaatg
ccagaatactccatcatggagacgccagagcttaagaaggagttgaacagatttggagtc
cgtcctctcccaaaacatcagatggtgttaaagctgaaggagatattccagtacactcac
caggtcatggagtccgattcagaggatgaaatctcatcctcccagccccgcttgtggaaa
gcaattgccaagcattgcagcccatccgaggcagatgggactgcagtgagaacaaagagt
tccaaagcctcaagcggagcgagcaagcagaagatgagtattttggtcccttccttgccc
gttctggggagcagtgatgacaacttaatgggcccctctacaacaagttgtgcagcagct
aagatgactgctgaaaccaaaactcatgcaggagatgccagcaggcaaaatgaagtaact
ctgtctcttgctggatctccagttaaaggttctctggcaatcagcactgatgagcagatg
ctcttagcatcacatgaatctacaacgtcttcgggggatggaacggaccattcctttggg
tcacagagttcatctgccaatgaatttgagacctgtgcccttgcattggaagaagatgat
aatgagggggtcccagcatctcagactgccacacaggatgcagataaacaggaggcagtg
agacgctacatccattcaaacccagctctctatcggaggatactcttttatgagcccttg
gagctggctgaactgcaagctgagttgaagcagaatggcatcaagattgggctgggaaag
ctcctggattttttagatgctcactgcattacctttaccacagctggggcacggaaagag
aagcagcaacataggggtaagaaaaagagaggcaaacgatattaa
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integrated database retrieval system
