Alligator sinensis (Chinese alligator): 102372249
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Entry
102372249 CDS
T02922
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
asn
Alligator sinensis (Chinese alligator)
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asn03021
]
102372249 (SCAF8)
03041 Spliceosome [BR:
asn03041
]
102372249 (SCAF8)
Transcription machinery [BR:
asn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102372249 (SCAF8)
Spliceosome [BR:
asn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102372249 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102372249
NCBI-ProteinID:
XP_025069354
UniProt:
A0A3Q0HBC9
LinkDB
All DBs
Position
Unknown
AA seq
1354 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAGGIXXXXVTPVLPTTTAAMSNNTPGTPVTPVTPANVVQSLPDPWM
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEHSEEPKKETPTSQMPLVSESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANLDDSIDIQQQDMDIDEGQDVVEEEIFEQEEKKSAVRSRSRTHSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKVDDLDGFAEGGMIDQETVNTEW
ETVRNSEAAKETVQTTQSATVEKNTVVTTQTEVYTQPVTMLQIPVAPAVPAVNLVPPAFP
VSMSVPPPGYSSIPPPPFLRASFNPSQPPPGFMPPPVPPVVPPPVVPPPVVPPVVPTSLV
QPPLPITQDTIKDVPFSTLVLPVGTVSSNLATPTLSAGSGFNPLPSSKPEAEEKGSHHTD
LQVSSNENVRSVQNDASSSSGLAGGVPPPSVSSSSGLVGGLPPPSVSSSSGLVGGLPPPS
ISSSSGLAGGVPPPSISSSSGLAGGLPPHSVSSSSGLAGGGPPPNVSSSSGLLPGAQPPI
VSSSSGVMPGVQPPIVSSSSGLLPPNISSSSGLLAGVQPPSVSSSSGLMAVPPPNVSSSS
GLMGLPPPNISNSSGLLAMQHPVGIHNMPHLNIGSPRMPGMPLLDIRPGLIPQSPGPRFP
LMQPGMPPQRNIPPPPTILDPSLHPPPRGPFPPGDLFNQTERPFGTPGRQNIDPISNAEK
RLPLGGENIQQEGDRDYRFPPVENRENLNRPSPVDVRDAAGRPPVDPREGLGRPPLESRE
HFARPHADMRENYGRPGLDGLGRREHFGFNTDKHWGQRGDYDEREHHAFPIFGGPKGFHE
DRERFRHVNYRFDARSGPGWNRGYEQDAHRDFDDRRRPWERQRDRDDRDFNFCREVNGNR
FGRDRMQNNWIPPPHTRVFEYFEGATSQRKAENMTQVNGENTETESQPPTVQLQNDPELY
EKLASSGEMNKEKNDTEADIESEPVVESTETEGT
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagccttcaacagcgagttatactcactaaatgattacaaaccaccc
atttccaaggctaaaatgacacagatcaccaaggcagcaatcaaagctataaagttctac
aaacatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggtg
cctggcctatatgtcattgactctattgtgcgacagtctcggcatcagtttgggcaagaa
aaagatgtgtttgccccaaggttcagcaataacatcatcagcactttccagaacttatac
cgttgtcctggagatgacaagagtaaaattgttagagtgctgaatttatggcagaagaat
aatgtattcaagagtgaaattattcagccgctcttggatatggcagggggaattcnnnnn
nnnnntgtgaccccagtcttgcctactaccacagctgctatgagcaacaatactccagga
actcctgtgacccctgttactccagctaatgtggtacaaagtttacctgatccttggatg
tctcagattgctaatacagatacgcttgctgcagtagcacagattttacagagtccacag
ggccaacagcttcagcagttaatacagacgctacaaatacaacagcagaaaccacaacct
tcactgctccaagcactggatgctggtcttgttgttcagttacaggccctcactgcacaa
cttacagctgcagctgctgctgccaacacacttaatccactggaacagagtgtctctttt
aacaagaagctgatggacaggtttgattttggggaagagtctgaacacagtgaagaacct
aaaaaagaaacacctacttcccaaatgcctctagtatctgaatctgtgaacaactcactt
tttcatcaactagctgaacagctccaacaacaaaatttagaacatctccggcagcaactc
cttgagcaacaacagcctcagaaggcaagcccagaggaaaatcaggaaggaaattttggt
tcagagcattccgcatcaccatcacaaggaagtagccaacagcagtttttagaagtagaa
gcaaacctggatgactcgatagatattcagcaacaggatatggatatagatgaaggacaa
gatgtagtagaagaggagatttttgaacaggaagaaaagaaatcggctgttcgttcaaga
tcaagaacacactcaagatctcgttcaaggtcaccaagaaagcgaaggtcaaggtcacgg
tctggttctcgaaaacgtaaacacagaaaacgttcacgctcaagatcaagagagaggaaa
aggaagtcatctcggtcatactccagtgaaagaagagctagggaaagggaaaaagagagg
cagaagaaaggattgcctcctataaggtccaaaacactaagtgtctgcagtactactctt
tgggttggtcaagtcgacaagaaagctacacagcaagatttaactaatttgttcgaagaa
tttggacaaatagagtctattaatatgattccccccagaggctgtgcatacgtctgcatg
gttcatagacaagatgcatatcgtgctcttcagaaactaagctctggatcctacaaaatt
ggatctaaaattattaagattgcctgggctttgaataaaggggtgaaaacagagtacaaa
cagttctgggatgtggatcttggagtttcatatataccttgggaaaaggtaaaagtggat
gatttggatggctttgctgaaggaggcatgatcgaccaggaaactgtaaacactgaatgg
gaaactgtgagaaactcagaggctgctaaagagactgttcaaactactcagagtgcaact
gtcgagaagaacacagtcgtcacaacacaaacagaagtttatactcaaccagtcactatg
ctacagatcccagtagctccagctgtgcctgctgttaatctagttccaccagcatttcct
gtctcaatgtctgtccctcctcctggctatagttcaattcctccaccaccattcttgcgg
gcaagtttcaatccttcacaaccacctcctggttttatgccacctccagtcccacctgtt
gtgccgccgcctgttgttccgccacctgttgttccaccagtagtcccaacatctttagtg
cagcctccattaccaattactcaagatacaataaaagatgttccttttagtacccttgtt
ttaccagttggcacagtttctagcaatctggccactccaacgttatcagctggaagtggt
tttaatcctcttccaagcagtaaaccagaggcagaagaaaaaggatctcatcatactgac
cttcaggtttcctcaaatgaaaatgttagatctgtccaaaatgatgcctctagcagctct
gggcttgcagggggagtgccgccacccagtgtttccagcagctctgggcttgtcggagga
ctgccgccacccagtgtttccagcagctctgggcttgttggaggactgccaccacccagc
atctccagcagctctgggcttgcaggtggagtgccaccacctagcatctccagcagctct
ggccttgctggaggactgccaccacacagcgtctccagcagctctggccttgcaggagga
gggccgccaccaaatgtctctagtagttctggacttttgccaggagcacaaccacctatt
gtctcaagcagctctggagttatgcctggagtgcagccccccatcgtctcaagcagctct
ggactactgccacccaacatctcaagtagctcaggacttctggcaggagtgcagccaccc
agtgtttcaagcagctcggggcttatggcagtaccaccacccaatgtctcgagtagttct
ggacttatgggattgccaccaccaaatatttcaaatagttctggacttctggcgatgcag
catcccgtaggaattcataacatgcctcatttaaatattggtagtccaaggatgcctgga
atgcccctcttagatatccgtccaggacttataccccagtcaccaggaccaagatttcca
ttaatgcaacctggaatgccaccacagcgcaatatccctcctcctccaacaatccttgac
ccatcccttcatccaccacctagaggtccttttcctccaggggatctttttaatcaaact
gagagaccttttggaacacctggaagacaaaatattgatcccatttctaatgcagagaaa
agactaccacttggaggtgagaacattcaacaggaaggagaccgagattatcgttttcct
ccagtggaaaaccgagagaatcttaataggccatccccagtggatgtcagggatgctgct
ggacgaccaccagtggatccaagagagggtctaggaagacccccactagagtctagagaa
cattttgcaagaccacatgcagatatgagagagaattatggaaggccaggtctagatggt
cttggtcgaagagagcattttggtttcaatacagacaaacactggggacagagaggagat
tatgatgaaagagaacatcatgcctttcctatctttggtggccctaaaggctttcatgag
gacagggagaggtttcggcatgtaaattacaggtttgatgctaggagtggtcccggctgg
aacagaggatatgaacaagatgctcacagagattttgatgaccgtagaagaccctgggaa
agacagagggatagggatgacagagattttaatttctgcagagaagttaatggaaacaga
tttggaagagacagaatgcagaacaactggatcccccctccgcatacaagggtttttgaa
tattttgaaggggccacttctcaacgcaaagctgagaatatgacccaggtaaatggtgaa
aatacagagacagaaagtcagccaccaactgtgcaacttcagaatgatccagaactttat
gaaaaactggcatcttcaggcgagatgaacaaagagaagaatgacacagaagctgatata
gaaagtgaaccagtggtagaaagcacagaaactgaggggacataa
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