Alligator sinensis (Chinese alligator): 102372346
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Entry
102372346 CDS
T02922
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102372346 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asn01009
]
102372346 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asn04515
]
102372346 (PCDH1)
Protein phosphatases and associated proteins [BR:
asn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102372346 (PCDH1)
Cell adhesion molecules [BR:
asn04515
]
Cadherins
Protocadherins
102372346 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
K319L-like_PKD
Mid2
MLANA
Syndecan
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
102372346
NCBI-ProteinID:
XP_006035771
UniProt:
A0A1U7S6P7
LinkDB
All DBs
Position
Unknown
AA seq
1198 aa
AA seq
DB search
MKQLASCLGLWVLLQFPASSSGTRVVYKVQEEQPPNTLIGSLAADYGFPDVGHLYKLEVG
APYLRVDGKTGDIYTTETSIDRENLRECQHQFPGDPCFLEFEVSITDLIMNSSPRLLEGQ
IEVLDVNDNTPNFASPVITLAIPENTNIGALFPIPLAMDRDSGPNGVASYELMAGPEAQE
LFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMND
NAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQATDMVRRLLRLDRA
TGLITVQGPIDREDVNILKFSVLAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLV
THQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKK
YFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFSQSFTEVTF
PENNDLDDLVMEVSASDADSGSNAKLVYSLVMDPSSKGIFSIDPDSGEIRVKTVLDREQR
ERYEFLVVAADKGSPSLKGTASVAINVMDKNDNDPKFMLSGYNFSVMENMPPLSPVGMVT
VIDADKGDNARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDAGDPPR
SAYVGVTINVLDENDNAPFITSPSNASYKHILPHTSPGQQVSKVKAEDIDSGVNAELIYS
ITGGNPFELFQISPSSGDITLEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNET
LANRTVLETLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVILVR
YCRQREAKSGYQAGKKETKDLYAPKQGNKSSKSKNKVKKSKSPKPPKPAEDEEETGLQKS
LKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQD
LPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAANQAQDLQDPSQH
SYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAM
TGTCTRECTEFGHSDTCWMPGQSSPNRRPKNALKLSTFVPYQDRGSQEQVGNGSPRLSEE
RSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTSDFQPATTPSSQTTKREIYL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctggcatcctgccttggcctatgggtcctccttcagttccctgcctcaagt
tctgggacacgtgtggtctacaaggtacaggaggagcaacccccgaacacactcattggg
agcctagctgctgactatggctttccagatgtggggcacctctataagctggaagtgggg
gccccgtatctgcgtgtggatggcaagacgggggacatttacaccactgaaacttccata
gaccgggagaacctacgtgagtgccagcatcagttcccaggggatccttgcttcctggag
tttgaggtatccatcacagatctgataatgaacagcagtccacgccttctagagggtcag
attgaggtactggatgtcaatgacaacacaccaaacttcgcctcacctgttatcacactg
gccatccctgagaacaccaacattggggctctctttcccatcccactggccatggaccgt
gactcgggccccaatggtgtggcttcctatgagctcatggcagggcctgaagcacaagag
ctctttgggctacaagtggccgaggatcaggatgagaagcagccacagctaattgtcatg
gggaacctggatcgggagcagtgggactcatatgacctgaccatcaaagtgcaagatggg
ggaaaccctccacgggcaagcagtgcccttctgcgcatcactatcctggacatgaatgac
aatgcacccaagtttgaaaaggccttgtatgaagccgagctctcagaaaacagtcctgtt
gggcattctgtccttcaggtgaaagccaatgactcggatcagggcgccaatgccgaaatt
gactattcctttcaccaggccacagacatggtacgccgcctgctacgcctggatagagcc
acaggcctcatcactgtacaggggcccattgatcgggaggatgttaacatcctcaagttc
tctgtcctggccaaggataaaggggctaatcccaagagtgcccgtactcaggtagtggtg
accataaaggatatgaatgataatgccccctccattgagatccgaggcattggtcttgtc
acccaccaagacggcatggcaaacatttctgaggatgtacctgtggagacggctgtggcc
ctggtgcaggtgtctgaccgggatgaaggagaaaatgctgtggttacctgtgtggttgct
ggtgatgttccattccagctgcgacaggccagtgagacgggcagtgacagcaagaagaag
tacttcttgcaaaccaccacaccactggactatgagtcagtgaaggagtacaccattgaa
attgtggctgtggactcaggaaacccacccctctccagcactaactcccttaaagtgcag
gtggtggatgtaaatgacaatgcccctgtctttagccagagcttcactgaagtgaccttc
cctgaaaacaatgaccttgatgacctagtgatggaggtgagtgccagtgatgctgatagt
ggctctaatgccaagcttgtttactccttggtgatggatccttcttccaagggtatattt
tctattgatcctgattctggtgaaatccgagtgaagacggtgctggaccgggagcagagg
gagcgctatgagttcctggtggtggcagctgacaagggcagtcccagcctcaagggtaca
gcatctgtggccattaatgtcatggacaaaaatgacaatgaccccaagttcatgttaagt
ggctacaacttctcggtgatggagaacatgccacctttgagcccagtaggtatggtgacg
gtgattgatgccgacaagggtgacaatgcccgcatccaactttcagtagaacaagacaat
ggggactttgtgatccagaatggcactggcaccatcctctccagtatttcttttgaccgg
gagcaacagagcacatacaccttccggctcaaggctgtggatgcaggggaccctcccaga
tccgcctatgtgggagtgaccatcaatgtactggatgagaacgacaatgccccttttatc
acctccccttccaatgcctcttataaacacatcctgccccacaccagccctgggcaacag
gtcagcaaggtcaaggctgaggacattgattctggggtcaatgcagagctgatctatagc
attactgggggcaacccttttgagctcttccagatttcacctagcagtggggatatcaca
ctggagaaagagatcttacgcaagcatcatggcctgcaccgcctagttgtgcgtgtcaat
gataaaggcaagccctcgcgccatggaactgcactggtgcacttttatgtcaatgagacg
ctggctaatcgcactgtgctggagaccctagtggggcacagcctggacacacccctggac
atagacattgctggggatcctgaatatgagcgcagcaagcaacgcagcaacatcctcttt
ggagtcattgctggcattgtggctgtaacgctcgtcatcgtgctggtcattcttgtgcgc
tattgtcggcagcgggaggccaagagtggctaccaagcaggcaaaaaagaaaccaaggac
ttgtatgcaccaaaacagggcaacaagagcagcaagagcaagaacaaagtgaagaagagc
aagtctcccaagccacccaagccagcagaggatgaagaggagacagggctgcaaaaatcc
ctcaagttcaacctcatgaatgactctgtaagtgacagcccccggatccatctacccctc
aactatccacctgggagcccggacctggggcgccactaccgctccaattcaccgctgccc
tccatccagctgcagcctcagtctccatctgcttccaaaaaacaccaggtggtacaggat
ctgcctgctacaaacacctttgttggcactggggacaataactcaacaggctctgaacag
tactcagactacagctaccgcaccaatccccagaaatataccaacaagcagttacctcat
cgccgagtgacattctctgcagccaatcaggcacaggacttgcaggacccctcccaacat
agttattatgacagtgggctagaggagtcagagacacccagcagcaaatcatcatcaggg
cctcgcattgggcctctggctctgcctgaagatcactatgagcgcaccacacccgacggt
agcattggggagatggagcaccctgaaaatgatctccggcctctgcctgatgtagccatg
actgggacctgtactcgggaatgcacagagttcggccactctgacacctgctggatgcct
ggccaatcctccccaaaccgcaggcccaagaacgccctcaaactctctacctttgtgcct
taccaagaccgagggagtcaagagcaagttgggaatggcagccccagactctcagaagag
cgcagcaccaaaatggccaacctccgtctgctccccacgtacagtgccttctccaacagt
agccatgagccctgcaaggactcccccatggaggaaattcctctcacccagacctcggac
ttccagccagccaccaccccctcatcccaaaccaccaagagggagatctacctgtga
DBGET
integrated database retrieval system
