Alligator sinensis (Chinese alligator): 102378688
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Entry
102378688 CDS
T02922
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
asn
Alligator sinensis (Chinese alligator)
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
asn04147
]
102378688 (COL18A1)
00535 Proteoglycans [BR:
asn00535
]
102378688 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
asn00536
]
102378688 (COL18A1)
Exosome [BR:
asn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102378688 (COL18A1)
Proteoglycans [BR:
asn00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102378688 (COL18A1)
Glycosaminoglycan binding proteins [BR:
asn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102378688 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
LDL
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102378688
NCBI-ProteinID:
XP_006022141
UniProt:
A0A1U7RLD5
LinkDB
All DBs
Position
Unknown
AA seq
1578 aa
AA seq
DB search
MAPAKPSLCLLLLLTCCFSLSEAQLLSWLGWERPKQEARTVPPEENSTTEEQTMGSLTSP
AASTLHAPLQTTAQQEGKIRNIFTLKRQEPESDVTVPTAAPSQTPKDKEENIAGVGAEIL
TVAEGIRSLVQLWDEKVTKGTEGTEELTTAAPFTAAHPSLSATSLVTGPAGIENMTADST
GGAQSPLETGQPEVVFPVPTGPPPVLWNRTRVLLQQPASPPPENFSTEVGLLQLIGDPPP
EQITKIYGPDNNPGYVFGPDANTGQVARYHLPSPFYRDFSLLFHIQPTTNKAGVLFAITD
SSQAVIYIGVKLSDAKEGKQHIIFYYTEPGSQSSYAAATFTVSSLLNQWTRFAVSVEDEE
VVLFLDCEEYDRIRFERSPDEMELEDGSGLFVGQAGGADPDKYQGVIADLKIKNDPHAAV
LQCEEDEDDTEEMSGDFGSGVEEKLHSSGKERGIPTVSGLPKPPPVTSPPIAGRPVEKVS
GSSQLQTEHIKAEETPPVSTGARVGQKGEKGEKGERGPKGDSRTGGVPSTGGVKGEKGEK
GELGVKGSAGFGYPGSKGQKGEPGAPGDPGPPGPPGPSGTILQHQDGSVVEHVTGPPGAM
GPPGLPGKDGFPGKDGEPGDPGEDGKPGDTGPQGFPGTPGEPGLKGEKGDPGVSVKGSPG
PPGPPGPPGIPGLSSKQDKLTFIDMEGSGFAGDLESLRGPRGPPGPPGPPGVPGLPGEPG
RFGMNHTAIPGPPGLPGKDGSPGLQGPPGPPGPPGREGLPGQPGFRGEKGDSGDLGLPGA
PGPKGSKGETGPQGSPGETGLAGLPGPIGPRGQPGPPGPPGPGYEAGFGDMEGSGIPIVS
SVPGPRGPEGPQGPPGLPGLKGDIGSSGQPGVPGQKGDPGTPGTNGQPGLEGFPGPQGPK
GDQGSPGVKGERGQDGVGLPGPPGPPGPPGEIVYASNKTLAVLPGPEGRPGHAGFPGPVG
PKGEAGSPGLQGFPGMKGEKGEPGVIIGPDGTVTALDTKGEKGEPGLRGPVGPLGPHGRP
GQKGEIGFPGRPGRPGMNGLKGEKGDPADPSGGFSLPGLPGPPGPPGPPGSPGSIVPVYD
GNAFTESGPPGPPGLPGYQGVPGHKGEKGDTGAPGPPGQFPYDLSRFGAAFRGEKGEQGD
SGLKGEKGEPGGGTLYGPGVVGQPGLPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGY
EGRQGPPGPPGPPGPPSFPGPHRQTNVVGPPGPPGPPGPPGTSGTSASSGLKILPSYQAM
LSTAHEVPEGWLVFIVDREELYVRVRNGFRRILLEDHTVISSTALDNEVYDKPPSIHFAH
GSSPSSGSQPHVPVHPHRDYNTYATVRPWGGDDIIANHHRLPKQPSIHQGAQHQQENLHD
FYPNRRPEDTPSAMHTHHDFQPALHLVALNTPLSGSMRGIRGADFQCFQQAREVGLTGTF
RAFLSSRLQDLYSIVRRADRSSVPIVNLRDEVLFNNWESLFSGTEAQLRAGAHILSFNGK
DILRDSTWPQKSVWHGSDSRGRRLTENYCETWRTDSSVVTGQASSLSSGKLLEQKASSCQ
NAFVVLCIENSFMTSSKK
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atggctccagccaagcccagtctatgcctcctgctcttgctaacctgctgcttctccttg
tcagaagcacagcttctgagttggctgggttgggaaagaccaaagcaggaggcaaggact
gtcccccctgaagagaacagcactactgaggagcagacgatgggatcgcttacctctccg
gcagctagcacgctccatgctcctttgcagacaacggcacagcaagaagggaaaatacgg
aatatatttacactcaagaggcaagagccagagtcggatgtgactgtgcccacagcggca
ccatctcagacaccaaaagacaaggaggagaatattgcaggggtaggggccgagatactg
actgttgctgaaggtatcaggagcttggtccagctgtgggatgagaaggtcaccaaggga
acagagggcacggaggaactgacaacagctgctcctttcactgctgcccatcccagcctc
tctgctactagccttgttacgggaccagccggcattgagaacatgactgctgactcgaca
gggggtgcccaaagcccactggaaactgggcagccagaagttgtgttccctgttcccaca
gggcctccccctgtcctatggaacaggactcgagtgctcttacagcagcctgcgtctcct
cccccagaaaatttcagcacagaagttggactcttacagctgattggagatcctccacca
gagcagataaccaaaatttatggccctgacaacaatcccggctatgtctttggccctgat
gccaacactggtcaagtggcccgataccacttgccaagccctttttatcgggacttttca
ctcctgttccatattcagcccacaactaacaaggccggtgtgctctttgccatcacagac
tcctcacaggctgttatttacattggcgttaagctctctgatgcaaaggaaggaaagcag
cacatcatcttctactacacagaaccagggtctcagagctcatatgcagctgccactttc
actgtgtcatccctcctgaaccagtggactcgctttgctgttagcgtggaggatgaggag
gtggtgctgttccttgactgcgaggaatatgaccggattcgtttcgaacgctcccctgac
gagatggaactggaggatggctctgggctctttgtggggcaggctggaggtgctgatcca
gacaaataccagggcgtgatagcagatttgaagataaaaaatgatccccatgctgctgta
ctccagtgtgaggaggatgaggatgatactgaggagatgtctggagattttggaagtgga
gttgaggaaaaactccactcatcaggaaaggagagggggatcccaactgtctcaggactc
cccaaacctccccctgtcacttctccccccattgctggcaggccggtggagaaagtcagt
gggagctctcagctgcagacagagcacatcaaagcagaagaaacaccgccagtatctaca
ggagccagggttggtcaaaaaggtgaaaagggggagaaaggagaacgtggtccaaaagga
gactccagaactggtggggttccatccacaggtggtgtcaaaggagaaaagggagaaaaa
ggcgaacttggtgttaagggaagtgcaggatttgggtatccaggttcaaagggccagaaa
ggtgagccgggtgctccaggggatcccggtcctcctggccccccagggccctctggaacc
atcttgcagcaccaggatggctctgtggtagagcatgtcactggacctccaggagccatg
ggccccccagggcttcccgggaaagatggtttccctggcaaggatggagagcctggggat
cctggtgaagacggcaagcctggtgacactgggccccagggattcccaggaactccaggg
gagcctggcctcaagggtgagaagggtgacccaggggttagtgtgaaaggatcccctgga
ccgcctggccctcctggcccacctgggataccaggactctcatctaaacaggataagctg
acattcattgacatggaagggtctgggtttgcaggtgatctggaaagtttgcggggaccc
cgaggcccaccaggtcccccaggacctcctggtgtgcctggcctgccaggagaaccagga
agatttgggatgaaccatacagcgattccaggtccccctggcctgcctggcaaagatgga
agccctggactgcaagggccacctggtcctccaggtcctccaggaagagaaggtttacct
ggccagccaggattcagaggagagaagggtgattctggtgatctaggccttcctggagct
cctggacccaagggcagtaaaggagaaactgggccacaaggatccccaggggaaacaggg
ttggctggccttcctggacctattggaccccgaggacagccaggtcctcctggacctcca
gggccaggctatgaagctggatttggtgatatggaaggctcaggcataccaattgtttcc
agtgttcctgggccacgtggacctgaagggccacaggggccaccaggactccctggacta
aagggagacattggcagttcgggtcagcctggtgtgccaggacaaaagggagatcctggt
actccagggacaaatggtcagcctggattggagggcttcccaggacctcagggaccaaag
ggtgaccaaggcagcccaggtgttaaaggtgaacgaggtcaagatggagttggactgcca
ggtccccccgggcccccaggacccccaggagagattgtttatgcctcgaataaaacattg
gctgttttgccaggcccagagggcagaccaggccatgctgggttcccgggcccagtggga
cctaaaggagaggcaggatccccagggctccaaggctttccagggatgaagggtgagaaa
ggagagcctggagtgatcattggcccagatgggacagtcacagcccttgacacaaaagga
gaaaagggtgaaccagggctgaggggaccagtgggcccactgggcccgcatggacggcct
ggacagaaaggagagattggctttcctggtagacctggtcgtcctggcatgaatgggctg
aagggtgagaaaggtgaccctgcagaccctagcggagggtttagtttaccgggtcttcca
ggtcccccaggtcccccaggccctccaggctctcctggcagcatagtgcccgtctatgat
ggtaacgcatttactgagtcaggccctcccggacctcctggcttgccaggttaccagggt
gtcccaggacacaagggtgagaaaggagacacaggtgccccagggcccccaggccagttc
ccttatgacctcagccgatttggtgccgcttttcggggtgaaaaaggagagcaaggggac
tccggcttaaaaggcgaaaaaggcgagcctggtgggggaacactatatggaccaggcgtt
gttggacagccaggtcttcctggtccccagggctaccctggtcttccgggtcccaaggga
gacagcattgttggcccacctggccccccgggacctcagggacctcctggcattgggtat
gaggggcgacagggcccccctggcccccctggcccccctgggcccccctccttcccagga
ccccacagacaaaccaacgtggttggccctcctggcccaccagggcctccaggacctcca
ggcaccagtgggacatctgcttcctctgggctgaagatcctgccatcgtatcaggccatg
ctgagcacagcccatgaggtgcctgaggggtggcttgtcttcatagtggacagagaagag
ctgtatgtccgtgtgcgaaacggcttccggagaatcctgcttgaagatcacactgtgatc
tccagcactgcgctggacaacgaggtgtacgacaagccacccagcatccactttgcacat
ggcagctctccctcttctgggtcacagccacatgtacccgtgcacccgcaccgcgattac
aacacttacgccacggtgcggccctggggaggagacgacatcattgctaaccaccaccgc
ctgcccaagcagccctccatccaccagggagcacagcaccagcaggagaatttgcatgac
ttctatccaaaccgccggccagaggacaccccctctgccatgcacacacaccatgacttc
cagcctgctctccacctcgtggctctgaacacccccctgagtggcagcatgcgcggcatc
cgtggagctgacttccagtgcttccagcaggccagggaggtcggactgacaggcaccttc
cgagccttcctctcctcccggctgcaggacctgtacagcattgtgcgcagggctgaccgg
agctcggtgcccattgtcaacctcagggatgaagtgctgttcaataactgggagtccctg
ttttcaggcacggaggcgcagctccgagctggtgctcacatcctctcctttaatggaaag
gatattctgagagactccacttggcctcagaagagcgtgtggcatggctctgactccagg
gggcgtcggctgaccgagaactattgtgagacgtggaggactgacagcagtgtggtgaca
gggcaggcctcctctctgagctcaggcaagcttctggagcagaaggcaagcagctgtcag
aatgccttcgtcgtcctgtgcattgagaacagcttcatgacctcttccaaaaaataa
DBGET
integrated database retrieval system
