Alligator sinensis (Chinese alligator): 102379686
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Entry
102379686 CDS
T02922
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
asn
Alligator sinensis (Chinese alligator)
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asn03041
]
102379686 (YTHDC2)
Enzymes [BR:
asn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102379686 (YTHDC2)
Spliceosome [BR:
asn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102379686 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
AAA_22
nSTAND3
Ank
ATPase
PhoH
Ank_4
AAA_23
AAA_7
AAA_16
T2SSE
SRP54
AAA_29
Motif
Other DBs
NCBI-GeneID:
102379686
NCBI-ProteinID:
XP_025062856
UniProt:
A0A3Q0GST4
LinkDB
All DBs
Position
Unknown
AA seq
1375 aa
AA seq
DB search
MSLVIMREMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGANRYLTVRKKDGSELAHTVM
TCSLIPNTKHAIRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIP
QIPVKRGESEFDSFRQSLPVFEKQEEIVRIIKENKVILIVGETGSGKTTQIPQFLLDDCY
KNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGV
LLRTLMAGDSTLSTVTHVIVDELHERDRFSDFLLIKLRDILQKQANLKLILSSAALDVNL
FIRYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMMKYKKEKQREEKQQTTLTEWY
SAQDSSSKPEAQRQRSVPSVAEEYDLLDDGGDTVFSQLTEKDVNCLEPWLIKEMDSCLSD
IWLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVASGRGFLSQVEQLVSMGANVHC
KSSNGWVALDWAKHFGQTEVVDLLESYSASLEFGNLDESSLVQANGGDLSAEDRELLKAY
HHSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNVHR
YQVFMLHSNMQTSDQKKVLKTPPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFD
ALNCVTMLKMVWISKASALQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQE
LCLHTKLLAPINCPIADFLMKAPDPPPGLIVRNAVQMLKTIDAMDTWEDLTELGYHLADL
PVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFS
DHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGG
GDIRDVNTNSENWAVVKGALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVLSQPQYK
KIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVCLFCGPARLPSNALQ
EPSSFRVDGAPNDSSDSEMEDKTTANLAVLKLDEWLHFKLDPEASSLLLQLRQKWHSLFL
RRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRS
NTSRKSSAETEFSDDSSNAEKVLMKSTSPAFHQPQKYKERGILHSKRSSEDRSDQSSVKS
TDSSSYPSPCASPSPPLSGKGSKSPSPRPNMPVRYFIMKSSNLRNLDISQQKGIWSTTPS
NERKLNRAFWESSIVYLVFSVQGSGHFQGFARMSSEIGREKSQEWGSTGLGGVFKVEWIR
KESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDHIPVVGKNTTD
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcgttattatgcgtgaaatggaatttccctcttctttgactagtacggaacga
gcttttattcaccgactgagtcagtcccttggcctcatctccaaaagcaaagggaaagga
gcaaacagatacctaactgtaaggaaaaaagatggttcagaattggcacatacagtaatg
acttgcagtttgattcccaatacaaaacatgctattaggagtctaattcagagatttcct
gtcaccaataaagaacgcactgaacttttgccaaaaacagaacgaggaaatgtgtttgct
gtcgaagctgagaatcgagaaatgagcaagacaagtgggagacttaacaacggcatccct
cagattccagtgaaaaggggagaatctgaatttgattccttcaggcaatctctaccagtt
tttgagaaacaggaagaaattgtcagaattattaaagaaaataaagttattttgattgtg
ggagaaactggatcaggaaaaacgactcagattcctcagttccttcttgatgattgttat
aaaaatggaattccatgtcgcatattttgcactcagccaagacgtttggcagcaattgct
gtagctgaaagggttgctgcagaaagaagagaaaagattggccagacaattggttatcag
atcagattagaaagcagggtttctccgaagacactattaacattttgcactaatggtgtt
ttacttcgcacactaatggcaggagatagcacactatcaacagtgacacatgttattgtg
gatgaattacatgagagggatagatttagtgatttcttgttaataaaactcagagacata
ttgcaaaaacaagcaaatttgaaactgattctatctagtgctgccctagatgtgaatctg
tttatcagatattttggaagttgcccggtaattcacatacaaggaagaccatttgaggtt
aaggagatgtttttagaagacattttacgaagtactggatatacaaataaggaaatgatg
aaatacaaaaaagaaaaacaacgagaagagaaacagcaaacaaccctcacagaatggtat
tctgctcaagacagtagtagtaaaccagaggctcaaagacaaagatctgtcccgagtgta
gctgaagaatatgacctgttggatgatggtggtgacacagtattcagtcagctgacggaa
aaagatgtgaactgtcttgaaccttggttaataaaagaaatggattcctgtctctctgac
atatggttgcataaagatgttgatgcctttgctcaggtgtttcaccttattttaactgaa
aatgtcagtgttgattataggcacagtgaaaccagtgcaactgcgctaatggttgcttca
gggagaggcttcttgagtcaagtagagcagctagtcagtatgggagcaaatgtgcactgc
aaatcatccaatggctgggtggctttggattgggctaagcactttggacagactgaagtg
gttgaccttctggaatcctatagtgcttccttggagtttggaaatctggatgaaagttct
ctggtccaggcaaatggtggtgaccttagtgcagaagacagagagctactgaaagcatac
catcacagttttgatgatgagaaagtggatctggacttgattatgcacctactttacaac
atctgtcatagttgtgatgctggagcaattttaatttttctacctggctacgatgaaata
gttagcttgagggatcgcattctgtttgatgacaagagatttgctgataatgttcacagg
taccaggtttttatgctgcattcaaatatgcaaacatcagatcagaagaaggtgctgaaa
actccacccccaggcatccgcaaaataattctttcaactaacattgcagaaaccagcatt
acagtcaatgatgttgtgtttgttattgactctggcaagatgaaagagaaatcctttgat
gcattgaactgtgttacaatgttaaaaatggtatggatttcaaaagctagtgccctccag
cgaaaaggcagggctgggcgctgccggcctggaatctgtttccgactcttcagcaggctc
cgatttcagaatatgttggaattccagactccagaacttctaagaatgccattgcaggag
ctttgtttgcacacaaaactgttggctccaattaactgtcctattgctgattttctgatg
aaagccccagatcctccaccaggcttaattgtcagaaatgctgttcaaatgcttaagaca
atagatgccatggatacctgggaagatctcacggaactcggttatcatcttgctgacctc
ccagtagagccacaccttggtaaaatggtgttgtgtgctgttgttttgaagtgcctggat
cctattcttaccattgcttgcactcttgcatatcgagacccttttgtcctacctacacag
gcctcacaaaaacgtgcagctatgctgtgtagaaaacgttttactgcgggaacatttagt
gaccatatggcgcttctcagggcttttcaggcatggcaaaaggcacggagtgacgggtgg
gagagagccttctgtgagaagaactttctttcccaggctacaatggaaataatcataggg
atgaggacacagttacttggtcagctcagagcttcaggttttgtgagggctagaggtgga
ggtgatattcgggatgttaacaccaactctgaaaactgggctgtagttaaaggtgctcta
gtagctgggatgtatccaaacctcgtccatgtggacagagagaaccttgtattaactgga
ccaaaagagaagaaagtgcgatttcacccaacctctgttcttagtcagcctcagtataaa
aagattcctccagcaaatggccaagctgcagctattcaggcgcttcccacagattggcta
atatatgatgaaatgactagagcacacagaatagcaaacatccgatgctgttctgctgtg
acacctgttacagtgtgcctcttttgtggaccagcaagattaccaagtaatgctttacag
gagccctcatctttcagagtggatggtgcacctaatgatagtagtgatagtgagatggaa
gacaaaacaactgctaatttggctgtattgaagctagatgaatggctgcatttcaaacta
gatcctgaggcttccagtctgctgttacaactcagacagaaatggcacagcttatttctt
cgccgcatgagagccccttctaaaccttggtctcaagttgatgaagcaactataagagca
atcatagctgttttaagtactgaagagcagtctgcaggtttacagcagccttcaggaatt
ggacaaagaccaagaccaatgtcttctgaagagcttcccttagcatcttcatggagatca
aataccagcagaaaaagctcagcagaaacagaattctctgatgactcttctaatgctgaa
aaagtcttaatgaaatctacatcgccagcatttcaccagccacagaaatacaaagaaaga
ggtatcttacattccaaacgaagttcagaagacaggtcagatcagtcatctgtgaaatcc
acagacagcagcagttatcccagcccatgtgccagtccttctcctccattatctggaaag
ggctccaagtctccttcaccaagaccaaatatgccagttcggtacttcataatgaagagc
agcaatctgagaaaccttgatatttctcagcaaaagggtatatggtctacaaccccaagc
aatgagcggaaactaaatcgagctttctgggagagcagtatagtttacttggtattttca
gttcaaggatctggacattttcagggttttgctagaatgtcttcagagataggacgtgag
aaaagtcaggagtggggctccacaggcttaggaggagtgtttaaggtggagtggatccgg
aaagaaagtcttccctttcaatttgcgcatcacttactcaacccttggaacgacaataag
aaagtacaaataagcagagatggccaggaactggaaccacaggttggagaacagttgcta
cagctttgggatcatattcctgtggttggaaaaaacacaactgattga
DBGET
integrated database retrieval system
