Alligator sinensis (Chinese alligator): 102379719
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Entry
102379719 CDS
T02922
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X2
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102379719 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asn03019
]
102379719 (XAB2)
03041 Spliceosome [BR:
asn03041
]
102379719 (XAB2)
Messenger RNA biogenesis [BR:
asn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102379719 (XAB2)
Spliceosome [BR:
asn03041
]
Complex B
Other components
Prp19-related factors
102379719 (XAB2)
Complex C
102379719 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
NRDE-2
LTN1_E3_ligase_6th
TPR_1
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
102379719
NCBI-ProteinID:
XP_006034274
UniProt:
A0A1U7SM32
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MPDMETPGAVGRTDLVFEEEDLQYEEEILRNPFSVKCWMRYIEFKQSAPRHALNLLYERA
LKELPGSYKLWYNYLKQRRKQVKSRCVTDPAYEEVNNCHERALVFMHKMPRIWLDYCQFL
TEQCRVTRTRRTFDRALRALPITQHHRIWPLYLAFVRRHPLPETAVRVYRRYLKLSPEGA
EEYIEYLRSIDRLDEAALRLAAVVNDDKFVSKEGKSNYQLWHELCDLISQNPDKVKSLNV
GAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVQTVMTVRDFSQVFDSYA
QFEESMIAAKMETASELGKEDDDEVELELRLARFERLMLRRPLLLNSVLLRQNPHNVHEW
HKRVQLHAGNPQQIINTYTEAVRTVDPAKATGKPHTLWVAFAKFYEDNGQLEDARTIFAK
GTQVNFKQVDDLASVWCEAGEMELRHHNYDQALRLLRRATAMPARKAEYFDSSEPVQNRV
YKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIVINYALFLEEHKYFEESFKA
YERGIALFRWPNVADIWHTYLTKFIARYGGTKLERARDLFEQALDGCPQKYAKTIYLLYA
GLEEQHGLARHAMAVYERATRAVPPAEQYDMFNIYIKRAAEIYGVTHTRPIYEKAIEVLS
DEPARDMCLRFADMECRLGEIDRARAIYSYCSQICDPRTTGPFWQTWKAFELRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVYSSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPRTKDQILFVRGKASRAELAQLSRQANPDEIDIDDDLGDDGADDDEPDEVPLE
QQSVPSAVFGGLKDD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgccggatatggagacgccgggagcagtggggcggaccgacctcgtcttcgaggaggag
gacctgcagtacgaggaggagatcctgcggaaccccttctccgtcaagtgctggatgcgc
tacatcgagttcaagcagagcgcaccgcgccacgcactcaacctgctctacgagcgggcc
ctcaaggagctgcctggcagctacaagctgtggtacaactacctgaagcaacggcggaag
caggtgaagagccggtgtgtgaccgaccccgcgtatgaggaggtgaacaactgtcatgaa
cgtgcccttgtcttcatgcataagatgccgcgcatctggctggactactgccagtttctg
acggagcagtgccgtgtgacccgcacgcgccgcaccttcgaccgggcgctacgggcgctg
cccatcacccagcaccaccgcatctggccgctctacctggcctttgtgcgtcggcacccg
ctacctgagactgccgtgcgtgtctaccgccgctacctcaagctgagcccagagggggca
gaggagtacatcgagtacctgcgctccatcgaccgcctggacgaggctgccctgcgcctg
gccgccgtcgtcaatgatgacaagttcgtctctaaggagggcaagtccaactaccagctg
tggcatgagctgtgtgacctgatctcgcagaaccccgacaaggtgaagtcactaaacgtg
ggggccatcattcgtgggggcctcacacgcttcaccgaccagctgggcaagctgtggtgt
tccctggctgactactacatccgcagcggccacttcgagaaggcgcgggatgtgtacgag
gaggcggtgcagacggtgatgacggtgcgggacttcagtcaggtctttgacagctatgca
cagttcgaggaaagcatgattgctgccaagatggagacggcctctgagctgggcaaggag
gatgatgatgaggtggagctggagctgcgcctggcacgctttgagcggctgatgctgcgc
cggcccctgcttctcaacagtgtcctgctgcgccagaatccgcacaatgtgcacgaatgg
cacaagcgtgtgcagctgcatgctgggaacccccagcagatcatcaacacttacacagag
gctgtgcgcactgtggaccctgccaaggccacggggaagccacacacgctctgggtcgcc
tttgccaagttctatgaggacaatgggcagcttgaagatgcccggacaatctttgccaag
ggcacacaggtgaacttcaagcaggttgatgatctagccagtgtgtggtgcgaggctggc
gagatggagctgcgtcaccacaactatgatcaggccctgcgcctgctccggcgagccact
gccatgccagcccgcaaagctgagtacttcgactcttcagagcccgtccagaaccgcgtc
tacaagtccctcaaagtgtggtccatgttggcggacctagaggagagcctgggcaccttc
aagtctaccaaggcagtgtatgaccggatcctggacctgcgcatcgctaccccccaaatt
gtcatcaactatgccctgttcctggaggagcacaaatactttgaggagagcttcaaggcc
tacgagcgtggcattgcgctgttccgctggcccaatgtggctgacatctggcacacctac
ctgaccaagttcattgcacgctatggcggcaccaagctggagcgtgcccgtgatctcttt
gagcaggcactggacggctgcccccagaagtatgctaagactatctatctgctatatgct
gggctggaggagcagcatgggctggcgcgccatgccatggcagtgtacgagcgtgccaca
cgggctgtgccccctgcagaacaatacgacatgttcaacatctacatcaagcgggcagcg
gagatctatggtgttacccacacccgccccatctatgagaaggccattgaggtgctgtca
gacgagccagcacgggacatgtgcctgcgttttgctgacatggagtgccgtctgggcgag
atcgatcgggcccgcgccatctactcctactgctcccagatctgtgaccctcgtacaaca
ggcccattctggcagacgtggaaggcctttgagttgcgccatggcaacgaggacacgatc
cgggagatgctgcgcatccgccgcagcgtccaggccacctataacacgcaggtcaacttc
atggcctcgcagatgctcaaggtctacagcagcgccactggcactgtgtcggatctggcg
ccagggcagagtgggatggatgacatgaagctgctggagcagcgagctgagcagctggcg
gctgaagctgagcgtgaccagccccgcaccaaagaccagatcctctttgtcagggggaag
gcatcgcgtgcagagttggcccagctgtcccgccaggccaaccctgatgagatcgacatc
gatgacgacctgggtgacgatggggctgatgacgatgagcccgacgaggtgccgctggag
caacagagtgtcccatccgctgtctttgggggcctgaaggatgactga
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