Alligator sinensis (Chinese alligator): 102380776
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Entry
102380776 CDS
T02922
Symbol
SKIV2L
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102380776 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asn03019
]
102380776 (SKIV2L)
Enzymes [BR:
asn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102380776 (SKIV2L)
Messenger RNA biogenesis [BR:
asn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102380776 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
102380776 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
102380776
NCBI-ProteinID:
XP_025048650
UniProt:
A0A3Q0FR69
LinkDB
All DBs
Position
Unknown
AA seq
1271 aa
AA seq
DB search
MELERMVLLSLLELGCGGRFELLKGHNPGLDPLSTLPQGLPPHAPDLAAELERRFLASPD
WLPLHHFERAHRFWAREPEPRALFGLEPTPAHSELRAQRDPATGRVLGFAEVSTGCQGSL
GRGNLDTWVPAQLSGGRWRGSLNTWVHCVGVEGEAHCLGQAQTPGSIPAAEALRGSSTNF
PFWPGGLDEPGLDQISARGDQEEDVDFERDLLTVPPGWQRGVDFQPTAAGSAPGLLALPG
LLEALDTWDLGGLGDEAGGAEEQPKGAKDAPSPTPSPRLARTDSLEELVMKEVTPKSSTA
PPAPAQPPREQQWAVAVDVSAPVDDFYKRVPDPAFRWAFEPDAFQKQAILHLEQHHSVFV
AAHTSAGKTVVAEYAIALAQRHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLH
PEASCLIMTTEILRSMLYNGSDAIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVNI
ILLSATVPNTLEFADWVGRIKQKQIFVISTRRRPVPLEHFLYTGNSTRTQDQLFLLLDAR
GTFLTQGYYAALEAKKERTSKHAQTFGARQPTHQTTGPGQDKNVWLSLLGLLRRRDQLPV
VAFTFSRNRCDEHASMLTTADLTTGAEKSEIHVFFHKCIARLKGTDRQLPQVLHMEELLK
RGIGVHHSGILPILKEVVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGSCF
RDLLPGEYIQMAGRAGRRGLDTTGMVIILCKGQVPEMADLHKMMLGRALALESRFRLTYG
MILNLLRARGLRVEDVMRRSFSEFHTRRHAQVVPISCRGLQGGREKPLGKLXRLQEFLGD
QSRPTPPPQRKVLESAAGLKALSPGRVVVVCNGVHRNALGLVLQVSTDAGARSFTALVLC
DVPPEDGAPAEGTNPRSPVAEAEAPLPEDLLLTKLFLPEGRAGHVVQQLGPGDIAAVTAK
TLRISAERILEDSRRRPPPRYRLGWSLGGVGLPAWEWSLFFGSREANALQLKEPAVVEAP
THARRLEAALPGFHCPHSPRFPRQYAVLAGGRAAEAELEQLQFLLSDQSLLLLPQYPQRL
EVLRTLGYVEPGGAVGLAGRVACAMSSQELVLTELVLDNALTPLRPEEAAALLSCIACPH
PATAELQLTPALRQGLERLRAVAERVGQLQEACGVPEPLDDFVAQFGPGLMEVVYDPAPX
GPEASPFVELARLSAVQEGAVVRGIQRLAETCRDVRGAARVIGDPTLGAKMEAAAALIKR
DIVFAASLYTQ
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagcggatggtgctgctgtcactgctggagctgggctgtggggggcgcttt
gagctgctgaaggggcataaccctggcttggaccccctctccacgctgccccaggggctg
cccccccacgcccctgacttggccgcggaactggagcggcgcttcctggcctcccctgat
tggctgcccctgcaccactttgagcgtgcccacaggttctgggcacgggagccggagccc
cgggcgctgttcgggctagagcccacccctgcccactcggagctgcgggctcagcgggac
ccggccacgggccgtgtgctgggcttcgccgaggtgagcaccggatgccagggttctctg
gggagggggaacctggacacctgggtcccagctcagctctctggggggagatggaggggg
agcctgaacacctgggtccactgtgtgggggtagagggagaggcccattgcctaggacag
gcccagacacctgggtctattcccgcagccgaggctctccggggcagctccaccaacttc
cccttctggccaggtggattggatgagcctggcctggaccagatcagtgcccgaggggac
caggaggaagatgtggactttgagcgtgacctgctgacggtgcccccaggctggcagcgc
ggtgtggacttccagcccacagctgccggctctgccccggggctgctggccctgcctggc
ctcctggaggcactggacacctgggacctggggggcttgggtgatgaggctgggggggcg
gaggagcagcccaagggggccaaggatgctcccagccccacccccagccctcgcctagcc
cgcactgacagcctggaggagctggtgatgaaggaggtgaccccgaagtccagcactgcc
cccccagcccctgcgcagccccctcgggagcaacagtgggccgtggccgtggatgtctct
gcgcccgtggatgacttctacaagcgtgtccctgaccctgccttccggtgggcgttcgag
ccggatgccttccaaaagcaggccatcctgcacctggagcagcaccactccgtcttcgtc
gccgcccacacctcggccggcaagactgtggtggctgagtatgccattgccttggcccag
cgccacatgacacggaccatctatacgtcacccatcaaggctctgtccaatcagaagttc
cgggacttcaagacaactttcggagatgtggggctgctcacaggagacgtccagctgcac
cccgaggcctcctgcctcatcatgaccaccgagatcctgcgatcaatgctgtacaacggg
tcagatgccatccgggacctggagtgggtgatctttgatgaggttcattacattaacgat
gctgagcgtggggtggtttgggaggaggtcctcatcatgctgcctgagcatgtcaacatc
atcctgctcagcgccactgtccccaacaccctcgagttcgccgactgggtcgggcggatc
aagcagaagcagatctttgtgatcagcacacggcgccgccctgtgcccctggagcacttc
ctctacacgggcaacagcacgcgcacccaggaccagctcttcctgttgcttgatgcccgt
ggcaccttcctcacccaggggtactatgcagcgttggaggccaagaaggagcgcaccagc
aagcatgcccagacctttggcgcccggcagcccacgcaccagaccactgggcccgggcag
gacaagaacgtgtggctgtcactgctgggcctgctgcggcgccgggaccagctgcccgtg
gtggccttcacgttctcgcggaaccggtgcgacgagcacgcctccatgctgaccacggct
gacctcaccacgggcgccgagaagagcgaaatccacgtcttcttccacaagtgcatcgcc
cgcctcaagggcactgaccgccagctcccccaggtgctgcacatggaagagctgctgaag
cgaggcatcggggtgcaccacagcggcatcctgcccatcctcaaggaggttgtggagatg
ctcttcagccgggggctggtcaaggtgctgtttgccactgagaccttcgccatgggcgtg
aacatgccggcccgcacggttgtattcgactccatccgcaagcacgacgggtcctgcttc
cgtgacctgctgcctggtgagtacatccagatggctggacgggctgggcgccgggggctg
gacaccacaggcatggtcatcatcctgtgcaagggccaggtgcctgagatggctgacctc
cacaagatgatgctgggccgtgcgctggcgctggagtcacgcttccgcctgacctatggc
atgatcctaaatctcctgcgggcccgggggctgcgggttgaggatgttatgcgccgcagc
ttctctgagtttcacacccgccgccatgcccaggtagtgcccatcagctgtagggggctc
caagggggaagagagaagcccttggggaagctttagaggcttcaggagtttttaggagat
cagagcaggcctaccccacccccgcagaggaaggtgctggagtcggcagccgggctgaaa
gcgctgagccctgggcgcgtggttgtcgtctgtaacggtgtgcaccgcaatgccctgggc
ctggtcctgcaggtctcgacagatgcaggcgcccgcagcttcaccgctctggtgctgtgt
gacgtgccccctgaggatggggccccagcggagggcaccaacccccgcagccctgtggct
gaggccgaagcccccctgcctgaggatctgctactcaccaagctctttctcccagaaggc
cgggcgggacacgtggtgcagcagctgggtccgggtgacatagcggccgtgacggccaag
acactgcggatcagtgctgagcgcatccttgaggacagtcgacggcgcccccccccccgc
tacaggttggggtggagcctgggtggggtggggcttccagcatgggagtggagcctgttt
tttgggtcccgggaggcaaatgccctgcagctgaaggagccggctgtggtggaggcgccc
acccacgcccggcgccttgaggctgcactgcctggcttccactgcccccacagcccccgc
tttccccgccagtatgcagtgctggcaggggggcgggcagccgaggcagagctggagcag
ctgcagttcctgctgtctgaccagtccctgctgctgctgccccagtacccccagcggctg
gaggtgctacggacgctgggctatgtggagccagggggggcggtggggctggcgggccgt
gtggcctgtgccatgagcagccaggagctggtgctgactgagctggtgctggacaacgcg
ctgaccccgctgcggcctgaggaggcggccgccctgctcagctgcatcgcctgcccccac
cctgccactgctgagctccagctcacccccgccctgcgccagggcctggagcggctgcga
gcagtggcggagcgtgtagggcagctgcaggaggcctgcggggtgcccgagcccctcgac
gacttcgtggcacagttcgggcctggcctcatggaggttgtctacgaccccgccccttag
ggtccagaggcctcaccctttgtggagctagcacgcctgtcagcggtgcaggagggggcc
gtggtgcgtgggatccagcgcttggctgagacctgccgggatgtgcgtggcgctgcccgt
gtcattggggaccccacactgggtgctaagatggaggcggctgctgctctcatcaagcgt
gacatcgtcttcgctgccagcctctacacccagtga
DBGET
integrated database retrieval system
