Alligator sinensis (Chinese alligator): 102382843
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Entry
102382843 CDS
T02922
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
asn
Alligator sinensis (Chinese alligator)
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
asn01001
]
102382843 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
asn04054
]
102382843 (CIITA)
Enzymes [BR:
asn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102382843 (CIITA)
Protein kinases [BR:
asn01001
]
Serine/threonine kinases: Other
TAF1 family
102382843 (CIITA)
Pattern recognition receptors [BR:
asn04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102382843 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_14
LRR_8
LRR_9
NB-ARC
AAA_22
RsgA_GTPase
NPHP3_N
DUF7885
AAA_16
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
102382843
NCBI-ProteinID:
XP_025059031
UniProt:
A0A3Q0GH82
LinkDB
All DBs
Position
Unknown
AA seq
1219 aa
AA seq
DB search
MNLFKEILPRVRKILSSATLSDAHALLSLMLKEDVISKEYYQTLLHEKDREDLARKISLT
FVEKWDLCLNTLVPLCYLKLYNNKHQSITDGDSSLNRVLAGNKRQTMDSSILTENSFLDL
LHSDIDPVHLYTLLDAKSIENEESEVLTDPETDTINHDQFNNLDIFYTMENSESGEELYI
CSNTREAYARIAGLAEYVLKDPQERQMEDTFAGNLIFDEMATESTEGFTDVKMQKCHKRT
FLGTAENHSDTSEPKCRKTVDSPAVSTVNSSFLSVTLSGSPVNSSSFSLLHIPFSVTTIS
PTGRSFIAPGSIPNCLPVSAKGIQVIPGFPALPQQIISLPVRNGASDIIICPGSSFPTET
SQLASPILPVNLSGVEISKGSQIPFVPSKQTQKRPKPVEAFCMSLKDYFCDVCKFMPMER
EVTLDQLYIEGALLQGQHETKSGKNIIKGIEKEPVIYDLEEKEKTALERNQIFQVPGGKD
LETKIIVLLGKAGMGKSILVQKICQDWSNGKFSQFEFVFLYECRRLSLPEKRYSLKDLLL
EVFVRPQEGKEEVFKYILQNPSKVLLIFDGFEELQDHDGFTHFPDCQSYKELYSMRELFA
GLFQKKILSGCTLLLTARPKDKLNQYLSKVDKIIEMVGFSPQQVELYISRYFEGLPYCND
SIKLIKDCQYLFSHCYSPVMCRFICFLCEMVFETGHKDLPSTLSTLLLKFFQEKLTPAQT
DGTTIKNQQNIVKLAQVAWSLGEQHQNALKSDLXXXXXXXXXXXIKEFALKHGFVLPFTF
PKQSGNKEEEFGSVFSNFIIQNFLGTLHLVLAEEIKDKSLTKYFSFPSRKKKSHNWLDLM
PQFLAGILFLQDDPYLCSLSNKDVKKIITKKQKTLLKYIKRVQISNLCPERLLELFHCVY
ETQDRYLLQNIALRLERELSFLGTPLTPPDVYVLRSILKRSKKEFALDLRNSAIDLQGMK
DLVGLKNVTSFRASLTDMIRLWESLEQTQEYELLKISIQKFAIDPFKAKTMRDISDLSGF
VHMQEKMIHCMKETSGCQIHEIPAIRNLKKLEFALGPACGPRGFLRLVEILVSFPSLQQL
DLDALSENGIGDEGVKSLSQVFSQLTSLEVLNLSQNKITDLGAEKLATALPSLSSLKTLS
LYNNSICDAGAENIAKVLPAMASLRVLDVQYNKITDAGAQRLSGSLRKCPHMKSLAMWNP
TIPYGVLEHLQQLDSRIIL
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaaagagatcctgcctagagtaaggaaaatcctttccagtgctacactt
tcagatgctcatgctttgctcagcctcatgctgaaggaagatgttatatccaaggaatat
taccagactttactccatgaaaaagacagagaagacctagctaggaagatctctctcacc
tttgtggaaaaatgggatttgtgtttgaacaccttggttcctctgtgttatttaaaactg
tacaataataagcaccaaagtatcacagatggtgactcatctctaaacagggtcctagct
gggaacaaaagacaaactatggattcttcaattttgacagaaaatagcttccttgatttg
ctgcacagtgacattgatccagtgcacctgtataccctgttagatgccaagtcaattgaa
aatgaggaaagtgaggtcttaacagatcctgaaactgacaccatcaaccatgatcagttc
aacaatttggatatattttatacaatggaaaacagtgagagtggggaagaattatatatc
tgttcaaacacaagagaagcttatgctagaatagctggtttagcggaatatgtgctcaaa
gatccacaggagaggcagatggaagacacatttgcaggaaacctcatttttgatgaaatg
gccactgaaagcacagagggatttacagatgtcaagatgcaaaaatgccataaacgaaca
ttcttaggcactgcagaaaatcactctgatacttcggaacccaaatgcaggaaaacagtg
gattcccctgctgtgtctacagtgaacagtagtttcttatccgtgactttgagtggttct
ccagtgaactccagctccttctctctcctacacataccattttctgttaccactataagt
ccaacaggaagaagttttatagctcctggttccataccaaactgtctccctgttagtgct
aaagggattcaagtgattccaggttttccagcccttcctcagcagataattagtttgcct
gtaagaaacggtgcctctgatattatcatatgtccagggtcctccttccccactgaaaca
tcacagttggcatcacccattcttccagtcaatttatctggtgtagaaatttccaaggga
tcacaaattccttttgttccttccaaacaaactcagaagagaccaaagccagtggaagct
ttctgcatgtcactgaaggattatttctgtgatgtgtgcaagttcatgcccatggagcgt
gaagtaactctcgatcagctctacattgaaggggctcttttgcaaggtcaacatgaaaca
aagagtggaaagaatatcatcaagggcatagagaaagagccagttatatatgatttggaa
gagaaggaaaaaacggctttagaaagaaaccaaatatttcaagtcccaggaggaaaagat
ctggaaaccaaaataattgtgttactgggaaaagcaggaatgggcaaaagtattcttgtt
caaaagatctgtcaagattggtccaatggcaagttttctcagtttgagtttgtctttttg
tacgaatgcagaagactgagcttgcctgagaagcgatacagcctgaaggatttgctactt
gaagtctttgtcagacctcaagagggaaaagaggaagtcttcaagtacatattgcaaaat
cccagtaaagtcctcctcatttttgatggttttgaagaactgcaggatcatgatggcttt
acacatttcccagactgccaatcttacaaggagctgtacagcatgagagagctatttgca
gggctcttccaaaagaagatactcagtggttgtactttattactaacagctagacccaaa
gacaagttgaatcagtacttatccaaagtggacaagataattgaaatggtagggttctct
ccacaacaggtagaattatacatatccagatactttgaaggattaccgtactgcaatgat
tccattaaattaatcaaagattgtcagtatctattcagtcattgttatagccctgtcatg
tgtagattcatttgttttctctgtgagatggtgtttgaaacgggacacaaagacttgcct
tcaacactgtctactctcttactaaaattctttcaagaaaaactgacacctgcacaaaca
gatgggacaaccataaaaaatcaacagaacattgtcaagctagctcaggtagcctggagt
cttggtgaacagcatcaaaatgctctgaagagtgatctctnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnaattaaagagtttgctctgaaacatggctttgtactaccatttacattc
ccaaagcaatcaggcaacaaggaagaagaatttggcagtgtattctcaaatttcatcatc
caaaattttctgggtacacttcatctggtgcttgcagaagagatcaaggataaaagcctc
acaaagtatttttcattcccatccaggaagaaaaagtctcataattggttagatttgatg
cctcagtttttggctggaatattattcctgcaggatgacccatacctgtgttccctttca
aataaagatgtaaagaaaatcataaccaagaaacaaaaaacactcttaaaatatattaaa
agagtacagataagcaatctctgtccagaaaggctacttgagcttttccactgtgtttat
gaaacacaagaccgttatcttttgcagaatatagctttaagacttgaacgagagctgtct
tttctgggcactccgctcaccccacctgatgtctatgtgctacgttctattttaaaaagg
tcaaaaaaggaatttgccctggatctgaggaacagtgccattgatctacaggggatgaaa
gacctggttggcctgaagaacgtgacatcattcagagcttccctcactgatatgatcagg
ctctgggagtcattagagcaaacacaggaatatgagctgctgaagatttcaatacaaaaa
tttgcaattgatccatttaaggctaaaacaatgagggacatcagtgatctttctggcttt
gtacacatgcaagagaaaatgatccattgcatgaaagagacatctggttgccaaattcat
gaaattcctgctatcagaaaccttaaaaaattagaatttgcgctgggtccagcatgtggt
cctcggggattcttaaggcttgttgaaattcttgtgtcatttccatctcttcagcagcta
gacttggatgctctgagtgaaaatggaataggagatgaaggcgtaaaaagtctctctcaa
gtattttctcagctgacatcattggaagtattgaatttatcacagaataaaataacagat
ttgggtgcggaaaaactagctacagctcttccttccttatcttcgttaaagacacttagt
ttgtataacaacagtatttgtgatgccggagcagaaaatattgcaaaagtacttcctgca
atggcatccttaagggtgctagatgttcagtataacaagataacagacgctggtgcccag
agactgagtggcagcctgagaaaatgtccccacatgaagagcctggcgatgtggaatcct
actattccctatggagttcttgagcacctgcagcagctggattctagaattattttgtag
DBGET
integrated database retrieval system
