Alligator sinensis (Chinese alligator): 102384315
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Entry
102384315 CDS
T02922
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102384315 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asn03021
]
102384315 (SMARCC1)
03036 Chromosome and associated proteins [BR:
asn03036
]
102384315 (SMARCC1)
Transcription machinery [BR:
asn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102384315 (SMARCC1)
Chromosome and associated proteins [BR:
asn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102384315 (SMARCC1)
PBAF complex
102384315 (SMARCC1)
GBAF(ncBAF) complex
102384315 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
102384315
NCBI-ProteinID:
XP_006035738
UniProt:
A0A1U7SDH2
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
WLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFLDFKAGGT
LCHVLGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFINIEKMLVQNNCLSRPIIYLIPDIE
LKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSLDDDEWLRPVMKKDKQVLVHWGFYP
DSYDTWVHASDIDAEIEDPPIPEKPWKVHTKWILDTDVFNEWMNEEDYEVDENRKPVSFR
QRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAGLYGKRRGQ
KEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVAA
GGKEDEDPNKGDQSRSIDAGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGK
NKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLINYQ
VDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNKEKPTDLQN
FGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECI
LHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAA
LEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLDGAEE
EKMETETDGQQSEKVESKGEGEMEEGEKVQEGENERNPEKEQDSEVTADVKSEEKEAEEN
KENVDASKDKESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVAL
LVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQM
EQQHSQNAQQSHQHSSGPGMNPLGAPAHPGLLPHQQPPPYPMMHHQMPPPHPPQPGQMPG
PGAMIPGQPVPGRMMPSVSANIHPPGSGPAPPGMPPMSGNIIGPRVPLAAPNGMYPPPSQ
QPPPPAEGVTAPAAGAPPASAAP
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
tggctcggcaagcactacaagaagtatgtccaagcagatgctcctaccaataaaacattg
gctgggctggtggtgcagctgctacagttccaggaagatgcctttggaaaacatgtcacc
aatcctgccttcaccaaacttcctgcaaagtgcttcctggatttcaaagctggaggcacg
ttatgtcacgttcttggtgctgcttacaagtataagaatgaacaaggatggcggaggttt
gatctgcagaacccatcccgaatggatcgtaatgtggagatgttcattaacattgagaag
atgctagtgcagaataattgtttgagcagaccaatcatctacctcattccagatatagag
ctgaagttggctaacaagctaaaggatattgtcaaacgtcaccagggaacagtaactgag
gagaagtcaaaggcaacccaccatgtttatcctagtcctacctcactggatgatgatgaa
tggttgagacctgtgatgaaaaaggataagcaagtgctggtacactggggcttttaccca
gacagctatgacacttgggtgcatgctagtgatatagatgctgaaattgaagatcctcca
attccagaaaaaccatggaaggttcataccaaatggattttagacacggacgtatttaac
gagtggatgaatgaagaggattatgaagtggatgagaataggaagccagtgagctttcgg
cagcgaatctctatgaagaatgaagagcctgtgcgtagtcctgagaggagagacagaaaa
gcagcagcaagcaccaggaaacgaaagcattcaccttcccctcctcccactccagtggaa
tcaaggaaaaagactggaaaaaaaggacaagcaggtctgtatgggaaaaggagaggtcaa
aaagaagaggatgagcaagaagatcttaccaaggacatggaagacccaacacctgtaccc
aacatagaagaagtggtacttcccaaaaatgtgaacccaaagaaagacagtgaaaacacc
ccggtgaaaggaggaacagtagcagacctagatgaacaagatgaagagacagtggctgca
ggaggaaaggaagatgaagatcctaataaaggtgatcagagccgatcgattgatgcaggt
gaagacaacgtaaccgagcagacaaatcacatcattattccaagctatgcatcctggttt
gactacaattgcattcatgtaatcgagcgccgtgctcttccagagttcttcaatgggaaa
aacaaatccaagactccagaaatatacctggcttaccggaacttcatgattgatacgtat
cgcttgaaccctcaggagtacttgaccagcaccgcttgccgacggaacctgaccggagac
gtgtgtgctgtaatgagggtccatgcctttctggagcagtggggtctcattaactaccaa
gtggatccggaaagccgtcccatggccatgggcccccctcctactcctcatttcaacgtg
cttgcggatactccctctggacttatgcctctccatatccgaactcctcaggtccctgct
gctcagcagatgttgagttttcctgaaaaaaacaaagaaaagcccactgacctgcagaat
tttggactccgcacagacatttattcaaagaagaccttagcaaagagcaaaggagccagt
gccggaagagaatggacagaacaagaaacactactgctactagaggctctggagatgtac
aaggatgactggaataaggtctctgagcatgttggcagccgtacccaggatgagtgtatt
ctccattttctgaggcttcccatcgaggacccgtacttggaaaactctgatgcgtctcta
ggcccactggcttaccaacctgtgcctttcagccagtccggaaacccagtgatgagcact
gttgcttttctggcatctgtagtggatccccgggtggcgtccgctgcagctaaagctgct
ttagaggaattttctcgggtgcgagaggaggtaccactggagcttgttgaagcccatgtc
aagaaagtacaggaagcagcaagagcctctggcaaagtggatccaacttatggactagag
agcagctgcattgctggaacaggtccagacgagccagagaaattggatggagctgaagaa
gaaaaaatggaaactgagacagatgggcaacagtcagaaaaggtggaaagtaaaggagaa
ggtgaaatggaggaaggtgaaaaagttcaggaaggagaaaatgagagaaatccagaaaag
gagcaagacagtgaagtgactgctgatgtcaagtcagaagagaaggaagcagaggagaac
aaggaaaacgttgatgcaagcaaagacaaggagagtgatactgggaagaagaaagtggaa
cacgagatctctgaaggaaatgtagcaacggctgcagctgcagctcttgcctcagctgcc
accaaagcaaagcacctggcagcagtggaagagagaaagatcaaatctttggtagccctc
ctggtggaaacacaaatgaagaaactggagatcaagcttcgtcattttgaggagctggaa
acgatcatggacagagagaaagaagctctagaacagcagaggcagcaactgctgacggag
cgccagaacttccatatggagcagctgaaatacgctgaattacgggctcgccagcaaatg
gagcagcagcacagtcagaacgcccagcagtcgcaccagcactccagcgggccgggcatg
aacccacttggggcacccgcgcatccgggcttgctgccccatcagcagccccctccgtac
cccatgatgcatcaccagatgccccctcctcacccaccgcagccaggtcagatgccagga
cccggtgcgatgatacctgggcagcccgtgccgggccggatgatgccaagcgtgtctgcc
aacatccacccgccaggcagtggccctgcacccccgggcatgccgcccatgtcgggaaac
atcatcggacctcgcgttcccctcgcagctccgaacggcatgtatccacctccatcgcag
cagccaccaccgccagctgaaggggtgaccgcccctgccgcgggagcaccgccggcctcc
gcagccccctaa
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