Alligator sinensis (Chinese alligator): 102385002
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Entry
102385002 CDS
T02922
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102385002 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asn03019
]
102385002 (MTREX)
03041 Spliceosome [BR:
asn03041
]
102385002 (MTREX)
03009 Ribosome biogenesis [BR:
asn03009
]
102385002 (MTREX)
03016 Transfer RNA biogenesis [BR:
asn03016
]
102385002 (MTREX)
Enzymes [BR:
asn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102385002 (MTREX)
Messenger RNA biogenesis [BR:
asn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102385002 (MTREX)
Spliceosome [BR:
asn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102385002 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
102385002 (MTREX)
Ribosome biogenesis [BR:
asn03009
]
Eukaryotic type
Pre-60S particles
Helicases
102385002 (MTREX)
Transfer RNA biogenesis [BR:
asn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102385002 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
102385002
NCBI-ProteinID:
XP_025051930
UniProt:
A0A3Q0G0L0
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MFLNAEEQDLDWNCFNKHNKSATNHVQKYMQTTAAWERTGVNPRPCLHCRKRANAKSPAA
PAGKTKREAEVDSTEDAVFAKKVKLEDGAAEEVNLADLMPKVKVQAVETVEGCTHEVALP
ADEDFVGLKPRSGKAAKEYPFILDSFQREAILCVDNKQSVLVSAHTSAGKTVCAEYAIAL
ALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLY
RGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC
HLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLA
KGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEK
KMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIK
ALFATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVIL
MVDEKMSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRA
IPGVVEKVNKLEDQYNNIEIPNEDSVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPG
RLVKVKNEDDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKP
AKPGEKGEMQVVPVLVHLLAAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLL
DPIDDMGIKDQGLKKVIQKIEAFEHRMYSHPLHNDPNLETVYKLCERKAQIAVDIKAAKR
ELKKARTVLQMDELKCRKRVLRRLGFATSSDVIELKGRVACEISSADELLLTEMMFNGLF
NDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDIDEEN
YLNSFRPNLMDVVHTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNT
ELENKFAEGITKIKRDIVFAASLYL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgaacgcggaagaacaagacctagactggaattgtttcaacaagcacaacaag
agtgctactaaccatgttcagaagtacatgcagaccacagccgcctgggaaaggacaggc
gtgaatccccgcccgtgtttgcattgcaggaaacgcgccaatgccaaatctccagcagcc
ccggccggaaaaaccaagagagaggcagaggtggacagtaccgaggatgctgtgtttgca
aagaaagtcaagctggaggatggcgcggcggaggaggtgaatcttgcagatctgatgccg
aaagtaaaggtacaagctgtggaaactgttgaaggttgcacacacgaggttgcacttcct
gcagatgaagactttgtaggcctaaagccgagaagtggaaaagctgcaaaggaatatccc
ttcattcttgattcttttcaaagagaagctatcctttgtgtggacaacaaacagtctgtg
ttagtgtcagctcatacatcagctggcaaaacggtgtgtgcagagtatgccattgccttg
gctttgagggagaaacagcgtgtcatatttaccagtcctattaaagctctgagtaaccaa
aagtatcgtgagatgtatgaagaatttcaagatgttggtctaatgacaggagatgtcacc
attaatcctacagcttcttgtcttgtaatgacaacagagattttgagaagtatgctgtac
aggggttcggaggttatgcgagaagttgcctgggttatatttgatgaaatacattatatg
agagactcagaacgtggtgtggtttgggaggagaccattattttgctccctgacaatgtt
cactatgtgtttttgtctgccactattccaaatgcccgccagtttgctgaatggatctgc
catcttcacaaacagccttgtcatgtgatttacacagattatcgacctacacctctgcag
cattatatctttccagcagggggcgatggactccacctagtggttgatgaaaatggggat
ttcagagaagataattttaatacagcaatgcaggtattaagagatgctggtgatttggca
aaaggggatcagaaggggaggaaaggaggaacaaaaggaccatccaatgtgtttaagatt
gtgaagatgatcatggaaaggaattttcaacctgtaattatattcagtttcagcaagaaa
gattgtgaagcctatgcccttcaaatgacaaaactagacttcaacacagatgaagaaaag
aagatggttgaagaagtatttaataatgcaatcgactgtttgtctgatgaggacaaaaag
cttcctcaggttgagcatgtgcttccacttctaaagagaggaattggtatccatcacggt
ggcttgcttcctattttaaaagaaactatagaaattcttttttctgaaggattgattaag
gccttatttgcaactgagacttttgctatgggaattaacatgccagccaggacagtgttg
ttcacgagcgctcgtaaattcgatgggaaagatttccgatggatctcctcaggcgaatac
atccagatgtcgggtcgtgcagggcgtcgaggtatggatgacagaggtatagtaattctt
atggtggatgagaagatgagtccaacagtcggcaaacagcttcttaagggttcagcggat
cctctaaacagtgcttttcatttgacgtacaacatggtattgaacttgctgcgagtagag
gagattaaccctgaatacatgttagaaaaatccttttatcaatttcaacactacagagct
attccaggagtagtagagaaggtgaataagttggaagatcagtacaacaacattgaaatt
ccaaatgaggacagtgtggtcatctattataaaatccgacagcagcttgctaaacttggt
aaagagattgaagaatatattcacaagccaaagtactgtttgccctttttacagcccgga
aggctggtaaaggtaaaaaatgaagatgacgactttggttggggagtggttgttaacttc
tcgaagaaatcaaatgttaagccaaattctggtgaactggacccgttgtatgtggttgaa
gtcctgctacactgcagcaaagagagtttgaaaaattctgctactgaggctgcaaagcca
gcaaaacctggtgagaaaggagagatgcaggttgttcctgttttggtgcatcttctcgca
gctatcagcagtgtccgactttacatacccaaagatctgagacctattgataatagacaa
agtgtgttgaaatctatacaggaagttcaaaagcggttccctgatggggtaccattgcta
gatcctattgacgacatgggtattaaagatcaagggctgaagaaggtcatccaaaaaata
gaagcattcgagcataggatgtattcacacccacttcataatgatcccaatttggagaca
gtttataagctttgtgaaagaaaagcccagattgctgtggatattaaagcagcaaagcga
gaactgaagaaagccagaactgtcttacaaatggatgaactcaaatgccgcaaacgtgtt
ttgagaaggttgggttttgccacgtcctctgatgtcatagagttgaaaggaagggttgct
tgtgaaattagcagtgctgatgaactgctcctgacagaaatgatgtttaatgggctcttc
aatgacttatctgcagaacaggcaactgcattactaagctgttttgtattccaggaaaat
tccagtgaaatgcccaaattgactgaacagttggcaggaccacttcgccaaatgcaggaa
tgtgctaaaagaattgccaaagtttctgcagaagcaaaattggatattgatgaagaaaat
taccttaactccttcagacccaacctaatggatgtagtacacacatgggcaaatggagct
aattttgctcacatttgtaaaatgaccgatgtctttgaaggtagcataattcgttgtatg
aggcgactagaagaattgcttcgacagatgtgtcaagcagcaaaagccattggaaataca
gagctggaaaataagtttgcagaaggaattacaaaaatcaagagagacattgtgtttgct
gcaagcctttacctctga
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