Alligator sinensis (Chinese alligator): 102388006
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Entry
102388006 CDS
T02922
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
asn
Alligator sinensis (Chinese alligator)
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
asn03009
]
102388006 (PDCD11)
Ribosome biogenesis [BR:
asn03009
]
Eukaryotic type
90S particles
Other 90S particles
102388006 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
Spt6_S1
HAT_PRP39_N
Suf
OB_RRP5
HAT_PRP39_C
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
ARM_TT21
TPR_15
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
102388006
NCBI-ProteinID:
XP_006021352
UniProt:
A0A1U7RNN0
LinkDB
All DBs
Position
Unknown
AA seq
1825 aa
AA seq
DB search
MASTEESFPRGGTQKKPKKGRAARQSIERDNLFDTHHEEGSQKRKRNQEQPEKRKKLKTE
KKQAVKDHARDFDLLTVETLSEGMLLLGCVKEANSFELVVSLPNGLTGFVQVTSICDSYT
QMLSEQVAKQELLEDLNSLSDLYPPGMLVRCAVTSLQKTIDGHQSVKLSINPKDVNKALN
ALALRSGMLLSGLVSSVEDHGYLVDVGVSGTKAFLPRQKAQDYLRSSNKGAELKIGQYLN
CLVEEVKNNGRIVRLSVGRSEVAAAIATEEQNWTLSNLLPGLVVKAQVQKVTPYGLTLNF
LSSFTGIVDFMHLDPKKAGSYSQNQTVKACILSVHPTSKAVRFTLRHAFFQPGGLLSQLS
SDHFGAVVAECTVKSFCKKAGAIFELEDGTQAFARLRHLSNTKNSLKPGTFKTGSKHKCR
IIDYSPMDEVAILSLKPQIIDAPFLRYEDIPPGHVVEGKVLALKPLGMQVEVTDHIKGLV
PRLHLADMLLKQPEKKYSVGDKVKCRVLLSHPEEKKLILTLKKTLIGSRLPVLASYAAAK
PGLVTHGVVVCAREFGCVVKFYNDVKGLVPRNELGSEPIRFPEKVFYEGQVVKVTVLKCE
TEQEKLLLSFNLTSKSALEDEAEQAPKKKQEVTYETGQMVDVKVLKKRENGLEVSILSDN
VPAHLPMMHLSDHIVNCKLLWHWLQEEDVLPRVMCLSNKGGHVMLCRKPALISAVEEGQV
VRSFSEIQPGMQLTGFVKNIMPYGVFVEFPFGLAGLAPKAAMSDKFVTDTKDHFVVGQTV
VAKVTSIDEAKQRVLLCLKLSECSIEDPAAKSISLLSQCFEEMKEVRSIMRQRGHSKAAQ
NLCSLMFGQKLDLVVQEVKEDGSALFSGSSTAGLTVTATCHHLGDRNLVPGQKARALILH
VNALKSEVHVSLREELLNQKVKQLKENSQHSAVVQHVAEEFAIASLVETGQLTAVPVACH
FNDTFRFDSERLKVGQTILVTLKTVKAGEHGVLLALQGPAKAVIRPRKESETFEETLALV
QHSLCVGDTVTGKVKSVKPTRITVAINDDLTGCIHASQILDKVPIGTFPTSKLRAGQKVT
ARVIGGRDVKTHRYLPITHPHFTKTIPELSLRPSELKGKGCTTLNTEGDELSKRLKPYEV
GQTVTCFVMKYNVIKGWLEVEVTPDVRGRVPHLLLSLKPKVFKHPEKSFRSGQALSATVT
GMNPASTNLCLSLTGIHSLEKGTITLGTIKKVTPHGLIVALPFGKIGNASLFHLSDSYME
QPWEHFRVGEIIRCCILSNEDGKIQVSLRQSRTNPKSNSEVEDAEITCIDDVKEGQLIRG
YVKFIKPSGVFFALSSSVVGRIRFQKVAPYFVSKQAVYEEHLPEGKLLTARVLSVSSQED
HIELSLLPEDTGKLSVLPKSLGLPLHETKQEKKGEELKKLKAKRRRRDSESEQEAKPKKK
RMHPADKDDSGVEVYCWEEEEEEEEEENKSKSKQEVKHMEAPRLQVSTDFTWDEGLNALK
VPALSQPEESSDSEEDDDPQATLKKQTKKERELEKQRVEKELCKIETALMDPTRQPQSAD
DFDRLVLSNPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWGAMLN
LENMYGTEETLMKVFERAVQYNEPLKVFQHLADIYTNSEKQKQAEDLYHTMLKRFRQEKS
VWLKYATFLLKRGQAEATHRLLERALKGLPVKEHVDVISKFAQLEFQFGDPDHAKALFES
TLSSYPKRTDIWSIYIDMLIKHGSQKEVRDVFERVIHLSLAPKKMKFFFKRYLDYEKKYG
TADTIQAVKAAALGYVESKSSLAES
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atggcatctactgaagaaagcttccctcgaggtggtacccagaagaaacccaaaaagggg
agagcagccaggcagtcaatagagcgggataacttatttgatacccaccatgaggaagga
tctcagaaaaggaagaggaaccaggagcagccagaaaagcggaaaaagctcaagacggag
aaaaaacaagctgttaaagaccatgccagagattttgacctgctcacagttgagaccctg
agtgaagggatgctgttgcttggctgtgtgaaggaggccaacagctttgagctagtggtc
agcttgcccaatggactcactggcttcgtgcaagtgacaagtatctgtgactcctacacc
caaatgctgagtgagcaggtggccaagcaggagctcttggaggatttgaattcgctgtca
gacctgtacccaccagggatgctggtgagatgtgctgtgaccagtcttcagaagactata
gatggacatcagagtgtcaagctgtctattaaccccaaagatgtcaacaaggctctgaac
gccttggctcttagatcaggcatgctgctttctggcttggtatccagtgtggaagatcat
ggctacctcgttgatgttggagtcagcggcactaaagcgttcctgcctcgtcagaaagcc
caggattacctcagatcatccaacaaaggggctgaactgaaaatagggcagtacctgaac
tgtcttgttgaggaggtgaagaacaatgggaggattgtccgtctgtctgtgggtcggtct
gaggttgctgctgccattgcgaccgaagaacagaactggacgctcagtaacttgctgccg
gggctggtggtaaaagcccaggttcagaaggtgactccatatggtctcactctgaatttc
ctctcttccttcactgggatcgtggacttcatgcatctggaccccaaaaaagcggggagc
tattcacaaaaccaaactgtaaaagcctgcatcctgtctgtccaccctacatccaaggca
gtacggttcactttacggcatgccttcttccagcccggtggcttgctaagccagctctcc
agtgatcactttggggctgtggtggcagagtgtacagtgaagagtttctgcaagaaggct
ggtgccatctttgaactggaggatggcactcaggcctttgcacggctgagacatctctca
aacaccaaaaactccttgaaacccgggacttttaagacaggaagcaaacacaaatgtcga
atcattgactacagccctatggatgaggtggccattttgtccctgaagcctcaaattatt
gatgctccgtttctgagatatgaggacatccctcctgggcacgtggtggagggcaaggtg
ttggctctgaaaccccttgggatgcaggtggaggtgactgatcacatcaagggactggtg
cctcgcctgcacctggcagacatgcttctgaagcagcctgagaagaagtacagcgtggga
gacaaagtcaagtgccgggtgttactgtcccatcctgaagagaagaagctcatcctcact
ctgaagaagactctcatcggttccagacttccagtccttgccagttatgcagctgcgaaa
cctggcttggtcacgcacggcgttgtggtatgcgccagggagttcggctgcgtcgtgaag
ttctacaatgatgttaaaggcctggtccccaggaatgagctgggctcagagcccattcgt
ttcccagagaaagtcttctatgaaggccaggttgtcaaagtaacagtcctcaaatgtgag
actgagcaggagaaactgctgctgtcattcaacctgactagcaaatcagctttggaggac
gaagcagagcaggctccaaagaaaaagcaggaagtgacctatgaaactggacagatggtg
gatgtgaaagtcttgaagaagagagagaatggtttggaggtctcaatcttgtcagacaat
gttcctgctcaccttcctatgatgcacctgtccgaccacattgttaactgcaaactcctg
tggcactggcttcaagaggaggacgttctcccccgggttatgtgcctaagcaacaaggga
gggcatgttatgctgtgcagaaagcctgcattgatttctgctgttgaggaggggcaggtg
gtgaggagcttttctgaaatccagccagggatgcagctgactggtttcgtgaagaacatt
atgccctacggagtgtttgtggagtttccttttggcctggccggactggcacccaaagcg
gccatgagtgacaagtttgtgacagacaccaaggaccattttgtggtggggcagacagtg
gttgccaaagtgacaagcatcgacgaggcgaagcagcgggttctcctgtgcctgaagcta
tctgaatgtagcatagaagatcccgctgccaagagcatctctttgctgagccagtgcttt
gaggagatgaaggaggttaggagcatcatgagacaaagagggcattccaaggcagcccaa
aacctttgcagcttaatgttcgggcagaaactggacttggttgttcaggaagtgaaggag
gacggctcagcactctttagtggcagcagcactgctggattgactgtaacagccacttgc
catcacctgggagacaggaaccttgtccctggtcagaaagcaagagccttgattctgcat
gtaaatgcccttaaatccgaagttcatgtctcccttcgagaagagctgttaaaccaaaaa
gtcaagcagttgaaggaaaattcccagcactctgctgtcgtgcagcacgttgcagaagag
tttgccattgcctccttggtggaaacgggtcagctgactgccgtccccgtggcctgtcac
ttcaatgacacgttccgttttgactcggagaggctgaaggtggggcaaaccatcttggtg
accttaaaaacagtgaaggcgggtgagcacggagtcctgctagcactacaaggcccagca
aaggcagttataagaccccggaaagagtctgagacatttgaggagaccttggctttagtg
cagcactcgctgtgcgtaggggatacagtcactgggaaggtgaagtctgtcaagcccacc
cgcatcacagttgccatcaatgacgacctgacaggctgtatccacgcatcgcagatcttg
gacaaagttcccatcggcacctttccaacatccaagctgagagctgggcagaaggtgact
gcgcgggtcattggaggcagagatgtgaagacgcacaggtacttgcccatcacccatcca
cacttcacaaagaccattccagaactcagccttcggccaagtgagctgaaggggaaaggc
tgcacaaccctgaacactgaaggggatgaactgagcaagaggctcaagccttacgaagtc
gggcagacggtgacctgcttcgtcatgaagtacaacgtcatcaagggctggctggaggta
gaggtcaccccggacgttcgaggaagggttccacatctgctgctttccctcaaacccaag
gtcttcaagcatccagagaagagcttcaggagcggacaggctttgtctgctacagtgact
ggcatgaatcccgccagcaccaacctctgtttgtcccttacgggaatccactccctagag
aagggaaccatcactttgggcaccataaaaaaggtgaccccgcacggcttgattgtggcg
cttccctttggcaagattggcaatgctagcctcttccacctgagcgattcgtacatggag
cagccctgggagcatttccgcgtgggtgagatcatcaggtgttgcatcctttccaatgaa
gatggcaaaatccaagtctccctccggcagtccagaacaaatcctaagagcaatagcgaa
gtggaagatgctgaaattacttgcatcgatgatgtgaaggaaggccaattgatccgaggc
tacgtcaaattcatcaagccttcaggcgtgttttttgctttgtccagctctgttgtgggc
cgaatccggttccagaaggttgccccctactttgtatcgaagcaagctgtgtatgaggag
cacctgccagaagggaagctgctcacagccagggtcctcagtgtgagtagccaggaggac
cacatagagctctccctcctgcctgaggacactgggaagttgagtgtcttgcccaagtcc
ctgggcctgcccctccacgaaacaaagcaggagaagaagggagaggagcttaagaagctg
aaggcgaaacggagaagacgagactctgaaagcgagcaggaggcaaagccaaagaaaaag
agaatgcatcctgctgacaaagatgacagtggggttgaagtctattgctgggaggaagag
gaagaagaggaggaagaggagaataaaagcaaatccaagcaagaggtaaagcacatggag
gctccaagactgcaggtttctactgacttcacctgggacgagggactaaatgcactcaag
gtgccggcattgagtcagccagaggagagctcggacagcgaggaggacgacgatccacag
gccacgctgaagaagcaaaccaagaaggagagagagctggagaaacagagagtggaaaag
gagctctgcaaaatagaaactgccttgatggaccccacccggcagccccagagtgcggat
gactttgaccgcctggtgctcagcaaccccaacagctccatcctgtggctgcagtacatg
gctttccatctccaggccaccgagatcgagaaggcccgcgctgtggccgaaagggcgctc
aaaaccatctccttcagggaggagcaggagaaactgaatgtgtggggagctatgctgaac
ctggagaacatgtatggtactgaggagacgctgatgaaggtctttgagagagctgttcag
tacaacgagcccctgaaggtcttccagcatttggcagacatctacaccaactctgagaag
cagaagcaagccgaagacctgtaccacacgatgctgaagcgcttccgtcaggagaaatcg
gtgtggctgaagtatgccaccttcctcctgaaacgaggccaggccgaggccacgcacagg
ctcctggaacgtgccctcaaggggctgccagtcaaagaacatgtggacgtgatttccaag
tttgctcaactcgagttccagtttggggacccagaccatgccaaggctctttttgagagc
acactcagcagttatcccaaacgcactgacatctggtccatctacatagacatgttgatc
aaacatggcagccagaaggaagtacgggatgtttttgagcgggtcattcacctaagcctg
gcaccaaagaagatgaagtttttctttaaacgctacctggattatgagaagaaatatggc
acagcggacactatccaggctgtgaaagctgcagcactgggatatgtggagtccaagagc
tcccttgctgagagttaa
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integrated database retrieval system
