Candidatus Arthromitus sp. SFB-mouse-NL: SFBmNL_00909
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Entry
SFBmNL_00909 CDS
T03243
Name
(GenBank) Ribonuclease J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aso
Candidatus Arthromitus sp. SFB-mouse-NL
Pathway
aso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFBmNL_00909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aso03019
]
SFBmNL_00909
Messenger RNA biogenesis [BR:
aso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SFBmNL_00909
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Oxidored_nitro
Motif
Other DBs
NCBI-ProteinID:
AID44817
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Position
complement(910204..912027)
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AA seq
607 aa
AA seq
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MDLKVESKHDVIDSKNNYRSRDNYSKKDEANKRDGGSKKESSQQRREKAFNKDSKRTQNS
IKIIPLGGLNEVGKNITAIEYKNDIFVIDCGLKFPDDDMYGIDLVIPDITYLIKNKDRVK
GIFLTHGHEDHLGAVPYILKQINVPVYGTRLTLGILSVKLKEHYIDYAKLNVVKPKDVIK
FDSISMEFIKNNHSIPDAVSIAIHTPIGIVYHTGDFKVDFTPIDGEIADLGRIAELGRKG
IICMLGESTNVEKPGYTISERVIGKTFEDIFGKAKSRIIVATFASNVHRIQQIINAASMY
GKKVAISGRSMENITGVAKELGYIQFDDNVLIGIDEINRWAPDKIVIITTGTQGEPMSAL
ARMASGDHKKASIAPGDTVIFSATPIPGNEKLVSKVVNRLFKSGADVIYESKAKVHVSGH
ACQEELKLMLALAKPKFFIPIHGEFRHLNHHVELAESLGISRKNMLIMECGEIAEVKRNS
ISKVGTVPSGQIFVDGLGVGDVGNIVLKDRKHLSQDGVLTVVVTIDSQNGTIIAGPDIIS
RGFVYVRESEKLIDNVRDLVREVLRECEEDGIMDWSTLKSNIKDTLRSFLYEKTKRRPMI
LPIIMEI
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggatttaaaagtggaatcaaaacatgatgttattgattctaagaataattatagatca
agagataattattctaaaaaagatgaagctaataagagagatgggggttcgaaaaaagag
tctagtcaacaaaggagagaaaaagcttttaacaaggattctaaaagaactcaaaattct
ataaaaatcataccgcttggtggattgaatgaagttgggaaaaatataacagcaatagaa
tataaaaatgatatttttgttatagattgtggattaaaattcccagatgatgatatgtat
gggattgatttggtaatacccgatataacatatttaattaaaaataaagatagagttaaa
ggaatatttttaactcatggtcatgaggaccatttaggtgctgttccttacatattaaaa
cagattaatgtgcctgtgtatggaacaaggttaacattgggtatactatcagtgaaactt
aaagaacattatattgattatgctaagttaaatgttgtaaagcctaaagatgttatcaag
tttgacagtattagtatggaatttataaaaaataatcatagtattccagatgctgtttca
attgcaatacatactcctattggcatagtttatcatactggagattttaaggttgatttt
actccgatagatggagaaattgctgaccttggtaggattgcagaattaggaagaaaaggt
ataatttgtatgcttggtgagagtacgaacgttgagaaaccaggatatacaatttctgaa
agggtaattggtaagacttttgaagatatatttggcaaagcaaaatccagaattatagtt
gcaacatttgcatctaatgttcataggattcaacaaataattaatgcggcttctatgtac
ggaaaaaaagtagctatatctggtaggagcatggaaaatataacaggtgttgctaaagaa
cttggatatatacaatttgatgacaatgttttaataggaattgatgagattaatagatgg
gctccagataaaattgttattataactactggaactcagggagagcctatgtcagctctt
gcgagaatggcatcaggagatcataaaaaagcatcaatagctccaggagatactgttata
ttttcagcgactccaattccaggaaatgagaaacttgtatctaaggttgtaaatagatta
tttaaaagtggtgctgatgttatatatgaatccaaagctaaggttcacgtttcaggtcat
gcttgtcaagaagaacttaagttgatgcttgcacttgcaaaaccaaaattctttatacca
attcatggtgaatttagacatctaaatcatcatgttgaattagctgagagcttaggaatc
agcagaaaaaatatgttgataatggaatgtggagaaattgcagaggtaaagagaaattct
ataagcaaagtaggaactgttccatcaggtcaaatatttgttgatggacttggtgttggt
gatgtaggtaatatagtattgaaagatagaaagcatttatcacaggatggagttcttaca
gttgttgttactatagacagtcaaaatggaacaataattgcaggtccggatataatatca
agagggttcgtttatgtgcgtgaatctgagaaactaattgataatgttagggacttagtt
agagaagttcttcgtgaatgtgaagaagatggaataatggattggtctactttgaagtcg
aacattaaagatacacttagaagctttttatatgaaaaaactaagagacgtcctatgatt
ttaccaattataatggaaatataa
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