Agromyces soli: MTP13_01980
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Entry
MTP13_01980 CDS
T08198
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asoi
Agromyces soli
Pathway
asoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP13_01980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asoi03019
]
MTP13_01980
03009 Ribosome biogenesis [BR:
asoi03009
]
MTP13_01980
Enzymes [BR:
asoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTP13_01980
Messenger RNA biogenesis [BR:
asoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP13_01980
Ribosome biogenesis [BR:
asoi03009
]
Prokaryotic type
rRNA helicases
MTP13_01980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
UvrA_inter
adh_short
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UOE26574
LinkDB
All DBs
Position
complement(413307..415280)
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AA seq
657 aa
AA seq
DB search
MTSDDFPTPDPADAAPPAGTAEAEESAVDAPTDAPSDAPADAPAAPASPSGFAALGLDGP
VLAALDDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPILARLDLDVREPQ
ALVLAPTRELALQVCEAFERYAAHLPGVHILPVYGGQGYGVQLSALRRGVHVVVGTPGRI
MDHLDRGTLDLSGIRYLVLDEADEMLRMGFAEDVESILADTPDDKQVALFSATMPAMIRR
MSQQYLHDPEEVRVAGKTQTSANITQRHLVVSHMQKLDALTRILEVENFEGMIVFVRTKN
ATEELAEKLRARGFSAAAINGDLAQAQRERTVEQLKSGALDILVATDVAARGLDVDRISH
VVNYDIPTDSEPYVHRIGRTGRAGRSGDAISFVTPRERGLLARIEKATRQPIAQMPLPSV
DEVNETRLTRFDDRITAALDETSRIEAFRDIIAHYVRHHDVPEVDVAAALAVVGQGESPL
LLEPDPEPRFERGRRDDERRGRQRDGDDRGRERRDWDDRDGGRERPERRRRTDAGELRSY
RIAVGRRHRVEPRQIVGALANEGGLRREDFGRIQIRGDFSLVELPAELPRDVLDRLEGTR
ISGRLIELRPDRGGQQRFDRDGDRGRRRDDDRGRRRDEERSGPPARKPRHSSRRRED
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcagacgacttcccgacgcccgacccggccgacgcagcaccccccgccggtact
gccgaggccgaggagtccgccgtcgacgcccccacggacgccccgtccgacgcccccgcc
gacgctcccgccgcgccggcctcgccctccggcttcgccgcgctcggcctcgacgggccc
gtgctcgccgcgctcgacgacgtcggctacgagacgccctccgccatccaggccgcgacg
atcccgctgctcctcgagggccgcgacgtcgtcggcctcgcccagaccggcaccggcaag
acggcggcgttcgcgctgcccatcctcgcccgcctcgacctcgacgtgcgcgagccgcag
gcgctcgtgctcgccccgacccgcgagctcgcgctgcaggtctgcgaggccttcgagcgc
tacgccgcgcacctgcccggcgtgcacatcctgccggtctacggcgggcagggctacggc
gtgcagctctccgccctccgccgcggcgtgcacgtcgtcgtcggcacgcccggccgcatc
atggaccacctcgaccggggcacgctcgacctctccggcatccgctacctcgtgctcgac
gaggccgacgagatgctgcgcatgggcttcgccgaggacgtcgagtcgattctcgccgac
acgcccgacgacaagcaggtcgccctgttctcggccacgatgccggcgatgatccggcgg
atgtcgcagcagtacctgcacgaccccgaggaggtgcgcgtcgccggcaagacgcagacc
tcggcgaacatcacccagcgccacctggtcgtctcgcacatgcagaagctcgacgccctc
acccgcatcctcgaggtcgagaacttcgagggcatgatcgtcttcgtccgcacgaagaac
gccaccgaggagctcgccgagaagctgcgcgcccgcggcttctccgccgccgcgatcaac
ggcgacctcgcgcaggcgcagcgggagcgcacggtcgagcagctgaagtcgggcgcgctc
gacatcctggtggcgacggatgtcgcggcccgcggcctcgacgtcgaccgcatcagccac
gtcgtgaactacgacatcccgaccgactccgagccgtacgtgcaccgcatcggccgcacg
ggccgcgccgggcgctcgggcgacgcgatcagtttcgtgacgccgcgcgagcgcgggctg
ctcgcccgtatcgagaaggcgacgcgccagccgatcgcgcagatgccgctgccgagcgtc
gacgaggtgaacgagacccggctcacccgcttcgacgaccgcatcaccgcggcgctcgac
gagacgagccgaatcgaggcgttccgcgacatcatcgcccactacgtgcgccaccacgac
gtgcccgaggtcgacgtggccgccgcgctcgccgtggtcggtcagggtgagtcgccgctg
ctgctcgagcccgaccccgagccccgcttcgagcgtgggcggcgcgacgacgagcggcgc
ggccgccagcgcgacggcgacgaccgtggacgcgagcgccgcgactgggacgaccgcgac
ggcggccgcgagcgcccggagcgccgtcggcgtaccgacgccggcgagctgcgcagctac
cgcatcgcggtcggccgccggcatcgcgtcgagccgcggcagatcgtcggcgcgctcgcg
aacgagggcggcctgcgccgtgaggacttcgggcgcatccagatccgcggcgacttctcg
ctcgtggagctgcccgccgagctgccgcgcgacgtgctcgaccggctcgagggcacccgc
atctcgggccggctgatcgagctgcgccccgatcgcggcggccagcagcgcttcgatcgc
gacggggatcgcggccgccggcgcgacgacgaccgcgggcggcggcgcgacgaggagcgg
agcggaccgcccgcgcgcaagccgcggcacagctcccgccgccgcgaggactga
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