Agromyces soli: MTP13_09160
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Entry
MTP13_09160 CDS
T08198
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asoi
Agromyces soli
Pathway
asoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTP13_09160 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asoi03021
]
MTP13_09160 (rpoC)
03400 DNA repair and recombination proteins [BR:
asoi03400
]
MTP13_09160 (rpoC)
Enzymes [BR:
asoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTP13_09160 (rpoC)
Transcription machinery [BR:
asoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTP13_09160 (rpoC)
DNA repair and recombination proteins [BR:
asoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTP13_09160 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UOE27924
LinkDB
All DBs
Position
1902975..1906871
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDATTFDELRIGLATAEDIRKWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDEDGRHADMPGLENELRLEIKTIGDQRDARIATLMARKEEE
LAQLEADGAKSDVRKRAEAAADKEMTQVRKSADEQIAHLERVWEDFRTLKVGELKPEDSV
FHELQDRFGMYFEAYMGAEAIKKRLLSFDLAAEAEDLHLQIAEGKGQKKIRAIKRLKVVN
SFLQTGSSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTEKPGAPGEGR
AFSSIAEAILAFDQNRPGDIKLDLGAVVKIRLEGLHFGEGQEPENFEPGKSFLLETTLGR
AIFNEALPVDYPYFNKQAGKGQISAIVNDLAERYPKTEVAATLDRIKDAGFRWATRSGVT
VALSDIITPPSKGEIVAKYEKQAAKVQSQFEKGLTTDLERRQELIQIWTKATDEVAKAMQ
ESFPTDNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYF
IATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTGKGLELPIGLTDASGEL
VRDPNVENSVFARSLAADAVSAKGEVVAEAGEDVGDVLIDKLIAAGVESIKVRSVLTCES
AVGVCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGL
PRVQELFEARTPKGASPIVEAPGRITIDETDKQRKVILTPDNGDEPITYNVLKRSTLLVE
DAQHVELGQQLIVGTVDPKEVLRVKGVREVQKHLVNGVQDVYRSQGVPIHDKHIEVIVRQ
MLRKVTVVDHGDTDLLPGELVDRSKYNSINRAALTEGKKTASARQEVMGITKASLATESW
LSAASFQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVTVEATEEAKA
ERYPNRIFADDASFNEGDLSFVDFDAFSSDDFTPGNYS
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacgacgttcgatgagcttcgtatcggcctggccaccgcagaggacatc
cgcaagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcacgctgaag
cccgagaaggacgggctcttcggcgagcagatcttcgggccgtcccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcggtgcggggtc
gaggtcaccaagagctcggtccgccgcgagcggatgggccacatcgagctcgccgccccg
gtgacgcacatctggtacttcaagggcgtcccctcgcgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtgatcgatgtcgac
gaggacggccgtcacgccgacatgcccggcctcgagaacgagctccggctcgagatcaag
accatcggcgaccagcgcgacgcccgcatcgcgacgctcatggcccgcaaggaggaggag
ctcgcgcagctcgaggccgacggcgccaagtccgacgtccgcaagcgcgccgaggccgcc
gccgacaaggagatgacccaggtccgcaagtcggccgacgagcagatcgcgcacctcgag
cgcgtctgggaggacttccgcacgctgaaggtcggcgagctgaagcccgaggactcggtc
ttccacgagctgcaggaccgcttcggcatgtacttcgaggcctacatgggcgccgaggcc
atcaagaagcgcctgctctcgttcgacctcgcggccgaggccgaggacctgcacctgcag
atcgccgagggcaagggtcagaagaagatccgcgccatcaagcgcctcaaggtcgtcaac
tcgttcctgcagaccggcagctcgccggcggcgatggtgctcgacgtggtgccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggcggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccggaacaaccgtctccgccgcctgctcgacctc
ggcgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgcc
ctgttcgacaacggccgtcgcggccgcccggtcacgggcaccggcaaccgcgccctcaag
tccctcagcgacatgctgaagggcaagcagggtcgtttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctcttcaagccgttcgtgatcaagcgtctg
atcgacctgagccacgcgcagaacatcaaggccgccaagcgcatggtcgagcgttcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtctgcgccgccttcaacgcggacttcgacggcgaccag
atggccgtccacctgccgctgtcggtcgaggcccaggccgaggcccgcgtgctcatgctc
gcgtcgaacaacatcctgaagccgtcggacggccgtccggtgaccctgccctcgcaggac
atgatcatcggcctgcaccacctgacgaccgagaagccgggcgcccccggcgagggccgc
gcgttctcgtcgatcgccgaggcgatcctcgcgttcgaccagaaccgtccgggcgacatc
aagctcgacctcggcgcggtcgtgaagatccgcctcgagggcctgcacttcggtgagggc
caggagccggagaacttcgagccgggcaagtcgttcctgctcgagaccaccctcggtcgg
gcgatcttcaacgaggcgctgcccgtcgactacccgtacttcaacaagcaggccggcaag
ggccagatctcggcgatcgtcaacgacctcgccgagcgctacccgaagacggaggtcgcc
gcgaccctcgaccgcatcaaggacgccggcttccgctgggcgacccgctcgggcgtgacc
gtcgccctctcggacatcatcacgccgccgagcaagggcgagatcgtggcgaagtacgag
aagcaggccgccaaggtgcagtcgcagttcgagaagggtctcacgaccgacctcgagcgt
cgccaggagctcatccagatctggaccaaggccaccgacgaggtcgccaaggccatgcag
gagagcttcccgaccgacaacaccatcaaccgcatggtgacctcgggcgcccgtggtaac
tggctgcaggtgcgcaacatcgccggcatgcgaggcctggtgaacaacccgaagggtgag
atcatccctcgcccgatcatctcctcgtaccgcgagggtctctcggtcgcggagtacttc
atcgcgacccacggtgcccgaaagggtctggccgacacggcgctccgcaccgcggactcc
ggctacctgacccgtcgtctcgtcgacgtctcgcaggacgtcatcatccgcgaggacgac
tgcggcaccggcaagggcctcgaactgccgatcggcctcaccgacgcctcgggcgagctc
gtgcgcgacccgaacgtggagaactccgtgttcgcccgttcgctcgcggccgacgccgtg
agcgccaagggcgaggtcgtcgccgaggccggcgaggacgtgggcgacgtgctcatcgac
aagctgatcgcggcgggcgtcgagtccatcaaggtccgctcggtgctcacctgcgagtcg
gcggtcggcgtctgcgcgaagtgctacggccgttcgctcgcgaccggcaagctcgtcgac
atcggcgaggccgtcggcatcatcgccgcccagtcgatcggcgagccgggcacccagctc
acgatgcgtaccttccacaccggtggttcggcctcggccgacgacatcacgcagggtctg
ccccgcgtgcaggagctcttcgaggcccgcacccccaagggcgcgtcgccgatcgtcgag
gcccccggccgcatcacgatcgacgagaccgacaagcagcgcaaggtcatcctgacgccc
gacaacggcgacgagccgatcacgtacaacgtgctcaagcgctcgacgctgctcgtcgag
gacgcgcagcacgtcgagctcggccagcagctcatcgtcggcaccgtcgacccgaaggag
gtcctccgggtcaagggcgtgcgcgaggtgcagaagcacctggtgaacggcgtgcaggac
gtgtaccgctcgcagggcgtgccgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgcaaggtcaccgtcgtcgaccacggcgacaccgacctgctgcccggcgagctc
gtcgaccggtcgaagtacaactcgatcaaccgcgcggcgctcaccgagggcaagaagacc
gcctcggcgcgtcaggaggtcatggggatcaccaaggcctcgctggcgaccgagtcgtgg
ctgtcggccgcgtccttccaggagacgacccgcgtgctcacgcaggccgccatggagggc
aagagcgacccgctggtcggcctcaaggagaacgtgatcatcggcaagctgatccccgcc
ggcacgggccttgcgaagtaccgcaacgtcacggtcgaggcgacggaggaggcgaaggcg
gagcgctacccgaaccgcatcttcgccgacgacgcgtcgttcaacgagggcgacctcagc
ttcgtcgacttcgacgcgttctcgagcgacgacttcacgcccggcaactacagctga
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