Agromyces soli: MTP13_18110
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Entry
MTP13_18110 CDS
T08198
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
asoi
Agromyces soli
Brite
KEGG Orthology (KO) [BR:
asoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asoi03019
]
MTP13_18110 (hrpA)
Enzymes [BR:
asoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MTP13_18110 (hrpA)
Messenger RNA biogenesis [BR:
asoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MTP13_18110 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
HA2_C
Helicase_C
AAA_22
AAA_19
nSTAND3
HA2_N
T2SSE
ResIII
AAA_30
NACHT
SLFN-g3_helicase
AAA_11
SRP54
PhoH
FtsK_SpoIIIE
UvrD-helicase
Ploopntkinase3
AAA_25
AAA_23
Zeta_toxin
TsaE
Motif
Other DBs
NCBI-ProteinID:
UOE26191
LinkDB
All DBs
Position
3796085..3800089
Genome browser
AA seq
1334 aa
AA seq
DB search
MSRLAPVPPITYPPELPVSAQREEIARALREHQVVIVAGATGSGKTTQLPKLCLELGREQ
IAHTQPRRIAARTIAERIAEETGTELGGLVGYQVRFTDRASESTRVKVMTDGILLNEIHR
DRELRRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKLIVTSATIDPESFAKHFADA
DGTPAPVIEVSGRTYPVEIRYRPLVGDAAGDDDEGAAADDRDVQQGILDALDELDRESSG
DVLVFLSGESEIRDAEQAVRAHAERRGGRGGATEVLPLYGRLSSAEQHRVFEPSAVAGLR
RRVVLATNVAETSLTVPGIRYVVDAGTARISRYSARSKVQRLPIEPISQASANQRSGRSG
RTSDGIAIRLYGEDDFERRPEFTDPEILRTNLAAVILQMAALRLGPIEDFPFLTPPDTRG
VRDGLDLLAELGALEPGGRDDPRGPRLTRIGRQLSRLPIEPRYARMVLESKAHGVSREVL
AIVAGLTIQDPRERPLDRREEANQAHARFADPTSDFLTLLNLWNHLEQQQRELSGSAFRR
RCKAEFLNSLRVREWQDLYRQLVRLAKPLGLEIAAGPAGATAAEAGANADGIHRSLLAGL
LSQLGLRDDAKTSSGRGGAGQAREAERKGRRQQAEFLGARGARFAIFPGSALAKKPPAAV
MSAELVETSRLFARTNAAIDPAWAEQLAGPLAKRSFSEPRWERRQGAAVADEKVTLYGLA
IVPKRRMQLARADAELARELFIRHALVLEEWDWNRLDRRVYRFIRANRELRRELGEVEER
TRRRDLLLGDEAAVAFYEARVPAGVVDVRSFERWWRGEHREHPELLTMTRADLLGEDEAD
AAADGFPDGWVQGDQRLRLAYRFEPGAPDDGVTVLVPLVLLPRLEPSGFDWQVPGLRDEL
ITAMLRTLPKVLRRQVVPAAEWAAKIAAELPGGPEGGEARPPFAEIVAQTIKRLTYAPVS
AEDFELDRIPPHLRVTYRAVDERGRALGEAKELAELQSRLAERAGRAVAATFTGDGRNAA
DRSSRGPAGGERPGPAAVAVAAHEGPKPERGLTRWAWDALPAHVDTRQGGNTIRAYPAIV
DEGESVALVLVPTAEERDRASRRGIRRLLMLQTPSPSAYVQEHLSNEEKLSLGQSAYQGP
RALLEDCLAAVVDEELRRRHPDGLLASRAEFDEALAAIGAVVVERMFETAALVAKILKAS
READRAISKASSLQLMSALADARAQLEALTPAGFIQATGLGRLRHLPRYLEAITVRVRRM
QENPGRDRQLMTEFAQAAEAYTKAGGTVPIDPEADPALVRVRWLLEELRVGLFAQELRTA
ETVSVQRIRKALAG
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgactcgccccggtgccgcccatcacctacccgcccgagctccccgtctcggcg
cagcgggaggagatcgcgcgcgccctgcgcgagcaccaggtcgtgatcgtcgcgggagcc
accggatcgggcaagacgacgcagctgccgaagctctgcctcgagctcggccgcgagcag
atcgcgcacacgcagccccgccgcatcgccgcccgcacgatcgccgagcgcatcgccgag
gagaccggcaccgagctcggcggcctcgtcggctaccaggtgcgcttcaccgaccgggcg
agcgagtcgacccgcgtgaaggtgatgaccgacggcatcctgctgaacgagatccaccgc
gaccgcgagctccgccgctacgacacgatcatcatcgacgaggcgcacgagcgcagcctg
aacatcgacttcctgctcggctacctgaagcagctgctcccccgccgccccgacctcaag
ctcatcgtcacgagcgcgaccatcgacccggagagcttcgcgaagcacttcgccgacgcc
gacggcacccccgccccggtgatcgaggtgtccggtcgcacctacccggtcgagatccgg
taccggccgctcgtcggcgacgcggccggcgacgacgacgagggagccgcggccgacgac
cgcgacgtgcagcagggcatcctcgacgccctcgacgagttggaccgcgagtcgtcgggc
gacgtgctggtcttcctctccggcgagagcgagatccgcgacgccgagcaggcggtgcgc
gcgcacgccgagcgccgcggcggacgcggcggggcgaccgaggtgctccccctctacggc
cggctctcctccgcggagcagcaccgggtcttcgagccctcggcggtcgccgggctgcgc
cgccgggtggtgctcgccaccaacgtcgccgagacgagcctcaccgtgcccggcatccgc
tacgtcgtcgacgccggcacggcgcggatcagccgctactccgcgcgctccaaggtgcag
cgactgccgatcgagccgatctcccaggcctcggccaaccagcgctcgggccgctccggc
cgcacgagcgacggcatcgccatccgcctctacggcgaggacgacttcgagcgccgcccc
gagttcaccgaccccgagatcctgcgcacgaacctcgccgccgtcatcctgcagatggcc
gccctccggctcggcccgatcgaggacttccccttcctcaccccgcccgacacccgcggc
gtgcgcgacggcctcgacctgctcgcggagctcggcgcgctcgagcccggcggccgcgac
gacccgcgcggcccgcgactcacccggatcgggcgccagctctcccggctgccgatcgaa
ccgcgctacgcgcgcatggtgctggagtcgaaggcgcacggcgtctcccgcgaggtgctc
gcgatcgtcgcgggcctcacgatccaggacccccgcgagcgcccactcgaccggcgcgag
gaagcgaaccaggcgcacgcccgcttcgcggacccgacgagcgacttcctcaccctgctg
aacctctggaaccacctcgagcagcagcagcgcgagctctccggcagcgcgttccgacgc
cgctgcaaggccgagttcctgaattcgctgcgggtgcgcgagtggcaggacctctatcgt
cagctcgtccggctcgcgaagccgctcggcctcgagatcgcggccggcccggcgggtgcc
accgcggccgaggcgggggcgaacgccgacggcatccaccgctcgctcctcgcggggctg
ctctcccagctcggcctgcgcgacgacgcgaagacctcctccggccggggcggcgccggc
caggcgcgcgaggcggagcgcaaggggcggcgccagcaggccgagttcctcggcgcccgg
ggcgcgcgcttcgcgatcttccccggctccgcgctcgccaagaagccgcccgccgccgtg
atgagcgccgaactcgtcgagacgagccgactgttcgcccgcaccaacgcggcgatcgac
ccggcgtgggccgagcagctcgccggcccgctcgcgaagcgaagcttctccgagccgcgc
tgggaacgccgccagggcgcggccgtcgccgacgagaaggtcacgctctacggactcgcc
atcgtgccgaagcggcgcatgcagctcgcccgcgccgacgccgagctcgcccgcgagctc
ttcatccgccacgccctcgtgctcgaggagtgggactggaaccggctcgaccggcgcgtg
taccgcttcatccgggcgaaccgggagctccgccgcgagctcggcgaggtcgaggagcgc
acccgccgccgcgacctgctgctcggcgacgaagccgcggtcgcgttctacgaggcgcgc
gtgcccgccggcgtcgtcgacgtgcgcagcttcgagcgctggtggcgcggcgagcaccgc
gagcaccccgagctgctcacgatgacgcgtgccgacctcctcggcgaggacgaggcggat
gcggcggccgacggcttccccgacggctgggtgcagggcgatcagcggctgcggctcgcc
taccgcttcgagcccggcgcccccgacgacggcgtcaccgtgctcgtgccgctggtgctg
ctgccccggctcgagccgagcggcttcgactggcaggtgcccggcctccgcgacgagctc
atcaccgcgatgctccgcaccctgcccaaggtgctgcgccgccaggtcgtccccgccgcc
gagtgggcggcgaagatcgccgccgagctgccgggcggcccggagggcggcgaggcacgc
ccgccgttcgccgagatcgttgcgcagaccatcaaacgactcacctacgcgccggtgtcg
gccgaggacttcgagctcgaccgcatcccgccgcacctccgggtcacctaccgcgcggtc
gacgaacgcgggcgcgcactcggcgaggcgaaggagctcgccgagctgcagtcgcggctg
gccgagcgggccgggcgcgccgtcgccgcgacgttcacgggcgacggccggaacgccgcc
gatcgatcgagccggggaccggcaggcggcgaacgccccgggcccgccgccgtcgcggtc
gccgcgcacgagggcccgaagcccgagcgcgggctcacccgctgggcgtgggacgcgctg
cccgcgcacgtcgacacccgacagggcggcaacacgatccgcgcgtacccggcgatcgtc
gacgagggcgagagcgtcgccctcgtgctcgtccccaccgcggaggagcgcgaccgggcg
tcgcgccggggcatccgccggctcctgatgctgcagaccccctcgccgtcggcctacgtg
caggagcacctctccaacgaggagaagctctccctcgggcagagcgcctaccaggggccg
cgcgcgctcctcgaagactgcctcgcggcggtcgtcgacgaggagctgcggcgacggcat
cccgacggcctgctcgcgagccgcgcggagttcgacgaagcgctcgccgcgatcggcgcg
gtcgtggtcgagcgcatgttcgagaccgccgccctcgtcgcgaagatcctgaaggcctcg
cgggaagcggatcgcgcgatctcgaaggcgtccagcctgcagctgatgtcggcgctcgcc
gacgccagggcgcagctcgaggcgctcaccccggccggattcatccaggcgacggggctc
gggaggctccggcacctgccccgctacctcgaggcgatcaccgtgcgggtgcgccgcatg
caggagaacccgggccgggaccggcagctcatgaccgagttcgcgcaggccgctgaggcg
tacaccaaggcgggcgggaccgtgccgatcgacccggaggccgatcccgcgctcgtgcgc
gtgcgctggctgctcgaggagctccgcgtggggctgttcgcgcaggagctccgcacggcc
gagaccgtgtcggtgcagcggatccggaaggcgctcgccggctga
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