Acinetobacter soli: BEN76_06970
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Entry
BEN76_06970 CDS
T04684
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asol
Acinetobacter soli
Pathway
asol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BEN76_06970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asol03400
]
BEN76_06970
Enzymes [BR:
asol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BEN76_06970
DNA repair and recombination proteins [BR:
asol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BEN76_06970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APV35774
UniProt:
A0A1P8EHT1
LinkDB
All DBs
Position
complement(1441587..1445048)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQHEISQLKLQQLKTGEKRWIGSLLGSSGALLFKEMSAQISSLIVVVAKNSQHLAQLES
ELEFYGIKPVIFPDWEILPYDRLSPHQDIVSERLAILANMPQQGVLLISASTLAQKIAPI
SWIVGEHFDIQVGQKFDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQSQPI
RIDLFDNEIETLKFFDPETQRTTESLKQFRVLPAKEFPLKEGRSVFRERYAEAFPTANPK
KNPIYQDVLDGIASPGVEFYLPLFFSKESVQQGGYFTSYLPKNCIVITNDTLDEILISFW
KDVSQRYESRRHNIDHPILTSEELFLTPNIVLEQLNQLPRIEVSAAPASSRAGAINLPTA
EPVRLPVDPKKQQPFEVVKNYIDSAGHPVLLVAESAGRRETLKDALRPSLGDIPTIDSFQ
DFLKQQHPISITSAPLDRGLVIVDQLSVISENQLYEHRVVQRRRKRQQDVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLVTLEIDAQDYEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWNKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDHSLYMQFSS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHQKNIEDLEAGKVDIVIGTHKLLQ
ETVKFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDSIKEAILRELLRGGQVYFLHNEVDTIERAAENIRNLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLTLTAEINLHMPALIPDE
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPPAVKQLFSIHHIRLQAEQLGI
TKIDLNTQGGYIEFAQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVMVQLEAYDKRIQFA
QDLLSKLINELNV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacacgaaatttcacaactcaaattacagcaattaaaaacaggcgagaaacgc
tggatcggttcactcttgggttcatctggtgcacttctattcaaagaaatgtctgcccaa
atctcgtcactgattgtagtggttgcaaagaatagccagcatcttgcacaacttgaaagt
gaattggaattttatggcataaaaccggttatttttccagattgggaaattcttccatac
gatcgtctttcaccgcatcaagatattgtgtctgaacgtctagcaatattggccaatatg
ccgcagcagggcgtattattgatttcagcttcaacgcttgcacaaaaaattgccccaatt
tcttggattgtgggggagcattttgacattcaggttgggcagaaatttgacttagaaaaa
gaaaaattaagattgattcaggcaggatatcatttagtcgatactgtatatgaccatggt
gaatttgcagttcggggtagtattatggacatttacgcctctggacaatcacagcccatt
cgtattgatttgtttgataatgaaattgagacattaaagtttttcgatcctgaaacccag
cgtacgacagaaagtttaaagcaatttcgtgttttacctgctaaagagtttccattaaaa
gaaggtcgatctgtttttcgtgagcgttatgcagaagcatttccaactgcaaatccgaag
aaaaatccgatttatcaagatgttctagacggtattgcatcgcctggtgttgagttttat
ctacccctattttttagtaaagaaagtgtacaacagggtggttactttacttcgtactta
cctaaaaattgcattgtcattacaaatgatacattagatgagattttaatctcattttgg
aaagatgtatcacagcgttatgaaagccgccgacacaatatcgatcacccaattttgacg
tcagaagaattatttttaacgcctaatatagtgttagagcaactcaatcaactacctcgt
attgaagtgtcagctgcaccagcttcatcacgtgcaggtgcaattaacttaccaacagca
gaacctgtacgattacctgtcgatccaaaaaaacagcaaccttttgaagtcgtaaaaaac
tatatcgattcggctggtcatccggttttacttgttgcagaaagtgccggtcgccgtgaa
accctaaaggatgcgctacgtccaagtttgggtgatatcccaacaatcgacagctttcaa
gattttctaaagcagcagcatcctatttcaattaccagtgcgcctcttgatcgtggtttg
gtgattgttgatcaactgtcggttatttctgaaaatcaactttatgagcatcgagtcgtt
cagcgtcgtcgaaaacgccagcaagatgtctctgaagagtttctgatccgcagtttaaca
gaacttagtataggtgccccggttgtacatatcgatcatggtgtagggcgttatgccggt
ttggtcacgctggagattgatgcacaggactatgagtttttgcagctcgattatgccgat
gctgcaaaagtatatgtgcctgtcaccaatttacatttgattagccgctacagtggaggg
gatccagatttagcgccattacacaaaattggcactgatgcatggaacaaggccaaacgt
aaagcacttgagcaaattcatgatgtggctgcggagttgcttcacatacaagcacggcgt
cagtctaagccgggatttgcgtttgagctggatcatagtctgtacatgcaattctcaagc
ggctttgcttatgaggaaacactcgatcaagctaacgctattgaggcgaccttgcatgac
atgcaactggctaagccaatggatcgtttagtatgtggtgatgttgggtttggaaaaact
gaagtggccatgcgtgcggcatttgtcgcggtgcaaaacaataagcaagtggctgtattg
gttcccacgacactattagcccaacagcattatgaatctttcaaagatcgctttgccgac
tggccggtacgtattgaagtattatcgcgatttggttcgaataaaacccatcaaaaaaat
attgaagatttagaggcgggtaaagtcgatattgtgattggtacacataagttacttcag
gaaaccgtcaaatttcatgaccttggactgatgattgtcgatgaagagcatcgctttggt
gttcgtgataaagagcgaatcaaagccatgcgtgcagatgtcgatatgttgacccttaca
gcaacaccaattccgcgaactttaaatatggcattttcgggcatgcgcgatttatccatt
atcgcaacgccaccagccagacgtctagcagtcaaaacgtttgttcaagaacacaccgat
gactccattaaggaagccattttacgtgagttgcttcgaggtggtcaggtttatttcctg
cacaatgaagtggataccattgagcgtgcagcagaaaatattcgtaatttggtgccagaa
gcgcgtgtcgccgtggcacatggtcaaatgcgcgagcgcgaacttgagcaagtgatgcag
cagttttatcacaaagaatataatgttttggtttgctcaaccattattgaaacgggtatt
gatgtacctaatgccaacaccattattatggagcgagccgataagctaggtttggcgcaa
ctccatcagcttcgtggccgtgttggacgatcgcatcatcaagcttatgcctatctattg
gtgccttcaatcaaacaccttaaaggggatgcagaaaagcgtctggatgcgattcaacgc
gcatcaacgttaggggccggttttatgctggctacagaggatttagaaattcgtggtgca
ggcgaactattgggcgagcagcaaagtggatctatgcaggcgattggttatagcctttat
atggaaatgcttgaaaaagccaccaaagcgattcaaaagggtaaaacgcctaactttgat
gcgccgctcacgctcacagccgaaattaatttacatatgccggctttgattccggatgaa
tatttgggcgatgtacatcagcgcttactgttttataagcgtatcagtaataccgacact
caagagaaactagacaatattcgaatggaattgattgaccgattcggtacactaccacct
gctgtgaagcaattgtttagtattcatcacattcgactgcaagctgagcagttgggaatc
accaagattgatctaaacacgcaaggcggctacatcgagtttgctcaagacacaccagtt
caggcaatcagtattattcagcttatgcaaaagcaaccgacctactaccgtatggagggt
gggcagcgtcttaaagtcatggttcagcttgaggcatatgataaacgtatccaatttgcg
caggatttattatctaaacttattaatgagttgaatgtataa
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integrated database retrieval system
