Alteromonas stellipolaris LMG 21856: AOR13_1862
Help
Entry
AOR13_1862 CDS
T04153
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asp
Alteromonas stellipolaris LMG 21856
Pathway
asp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOR13_1862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asp03019
]
AOR13_1862
03009 Ribosome biogenesis [BR:
asp03009
]
AOR13_1862
Enzymes [BR:
asp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AOR13_1862
Messenger RNA biogenesis [BR:
asp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOR13_1862
Ribosome biogenesis [BR:
asp03009
]
Prokaryotic type
rRNA processing factors
AOR13_1862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALM90896
UniProt:
A0A0S1YKB7
LinkDB
All DBs
Position
2146071..2149361
Genome browser
AA seq
1096 aa
AA seq
DB search
MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEIARTYFPKGYRFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLA
GSYLVLMPNNPRAGGISRRIEGDERTELKESLNKLDLPDGMGLIVRTAGVGKSYEELEWD
LKVLLTHWEAISKVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQH
IQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMK
DAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGDSAHHVCPRCSGHGTIRGTESLALSIL
RILEEESIKENTGQIEAQLPVSVATYLLNEKRKAIQSLEKRHGVNLLLIPNANLETPHYQ
VTRRRPDDILDDASYEVELMPTVETETETTTSAPVKREEPALKGLVAPTAAPVVAPKAEA
PEAKAESSPSLFARIGKWLGDVLGGEDEKAKAEAEAKEKEKQKQSEGRNNRGGNQSRNRN
GDDRRRKPRKNTRRNQPQNKDGEQEQRTPRSEQDDKPRASNNKGRKPRKPRDETQKLKQE
QSRDNTQDEAPKTQDNKSQDAKPQEAQKKQEVAERRKRRDTRRSVRVKKDDNTQSNEAPA
SKPVKSLAVEKPKPAKAAPAETEEVNTAPVQSTDAPAASGSAAPVAQASQPAEVKSTTEQ
DAQSSSEQANNDTDENGQKRESRGRSRRSPRHVRAAGQRRKKEAQQSNDDNSAPVDEQST
ANVETTPSQEAPAADVSKSAPRAEDTQAAMPGKLEADTAHTQNENAQPATVDTAAENAEA
PTVAKTEDTQATKPGVLAPSEEKAAPATTETATAKPEAPKAETASEVVQDEMQFELASPK
SEADAPKPAKAEVTPAPVAEAAPKQVEINLGDDSAKAASETKTKPVPKANLKKAKAAVTK
PITTGAPASSRGRINASAPMAAPASVDDTFNDVALTAKSDDSRPAIVVSGRSAAIAKASA
AASAPTTLPASVDENA
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgcaactcaattagaagagttgcgtgttgcccttgttgatgggcagcgg
ttatacgatttggacatcgaaagtcctgggcacgaacagaaaaaagcaaacatttacaaa
ggtaaaataacccgcgttgagccaagcctcgaagcggcattcgtagactacggcgcagat
cgccacggtttcctacctcttaaagaaatcgctcgcacttacttccccaaaggctatcgt
ttcgaaggccgcccaaacatcaaagatgtcattaaggaaggccaagaagttatcattcag
attgataaagaagaacgtggtcaaaaaggcgcagcgcttactactttcttatcactcgca
ggtagctacctagtattaatgcctaacaaccctcgtgccggcggtatttctcgtcgtatc
gaaggtgatgagcgtacagaacttaaagaatctttgaacaaactagacctgcctgatggc
atgggcttaattgttcgtaccgcaggcgtagggaaatcttacgaagaattagagtgggac
ttaaaagtactacttacccattgggaagcaatttctaaagtggctgaagagcgtgaagcg
cccttcttaattcaccaagaaagtaacgtaattgtacgtgcaattcgtgactatttacgt
cgcgatattggtgaaatcttaattgataaaacaagcatctacgaacaagcattgcagcac
atccaacttgtgcgccctgactttgccaaccgcgtgaaactttatcgtggcgaagtacct
ttgttcagtcattatcaaattgagagccaaattgagtcggccttccaacgtgaagttcgc
ttaccttctggtggttcaattgttatcgaccctactgaagcacttacctctattgatatc
aactctgcccgtgcaacaaaaggcggtgatattgaagaaacagcactaaatacgaacctt
gaagcagctgacgaaattgctcgtcaacttcgtttacgcgacttaggtggcttggttgtt
atcgactttatcgatatgaccccagtacgtcaccaacgtgaagttgaaaaccgcatgaaa
gacgcggttcgcagcgatcgcgctcgcgttcagctaggccgtatctctcgctttggcttg
ctggaaatgtcacgtcagcgtttacgcccatcattgggtgattcagcgcaccatgtgtgc
cctcgctgttcaggtcacggcaccattcgtggtaccgagtcattagcactgtctattttg
cgtattcttgaagaagaaagcattaaagaaaacacaggccaaattgaagcacagcttcct
gtatcagtagcaacctatttgcttaacgaaaagcgtaaagcgattcaaagcttagaaaag
cgccatggcgttaacttattgcttatccctaacgccaaccttgaaacacctcactaccaa
gtaacacgccgccgtccagatgatattctagatgatgcaagctacgaagtagagttgatg
ccaacggttgaaacggaaactgaaaccacaacttcagcgccggttaaacgtgaagagcca
gcattaaaagggctagttgctcctaccgctgcgccagttgttgcacctaaagcagaagca
cctgaagctaaagctgaaagctcaccctcactctttgcccgcattggtaaatggttaggt
gatgtacttggcggtgaagacgaaaaagcaaaggcagaagctgaagcaaaagaaaaagaa
aagcagaagcaatctgaaggtcgcaacaaccgtggcggcaatcagtctcgcaaccgcaat
ggcgatgatcgtcgtcgcaaaccaagaaagaacactcgtcgtaaccagcctcaaaacaaa
gatggtgaacaagaacagcgtacgccacgttctgagcaagacgacaagccacgcgcgagt
aataacaaaggccgtaagcctcgtaaacctcgtgacgagactcagaaacttaagcaagag
caaagtagagataacacccaagacgaagcgcctaagacacaagataacaagtctcaagat
gctaagcctcaagaagcgcagaagaaacaagaagtggctgagcgccgcaaacgcagagat
actcgtcgcagcgtacgtgtgaaaaaagatgacaatactcagtcaaatgaagcaccggct
agcaaaccagttaaatctcttgccgttgagaaacctaaacctgctaaagcagcgcctgct
gaaactgaagaagttaatactgcgccagttcaatcaactgatgcaccagcagcttctgga
tcagcagcaccagtagcgcaagcctctcaaccagctgaagttaagtcgaccactgaacaa
gatgctcaatcttcttcagagcaagcgaacaacgacactgatgaaaatggtcaaaaacgc
gaaagccgtggccgttcacgtcgttctcctcgtcatgttcgtgctgctggtcagcgccgt
aagaaggaagcgcagcagtctaatgatgacaacagcgctccggtagatgaacagtcaact
gcaaacgttgaaactacgccttcacaagaagcacctgctgccgacgtgagtaaatcagca
cctcgtgcagaagatactcaagcggcaatgccaggtaaacttgaggcagatactgcgcat
actcaaaacgagaatgcccagccagctactgttgataccgctgccgaaaatgctgaagcg
cctactgttgctaagacagaagacactcaagccactaagcctggtgtattagccccatcg
gaagaaaaggcagcgcctgcgacaacagaaactgcaaccgctaagccagaagctccaaaa
gctgaaacagcatctgaagtcgttcaagacgaaatgcagttcgagttagcttcgccaaaa
agtgaagcggatgcgcctaagccagctaaagctgaagttactcctgcacctgtcgccgaa
gctgcacctaaacaggttgaaataaacctaggtgacgattcggctaaagcagcaagtgaa
actaaaactaagcctgtgccaaaagcgaaccttaagaaagcgaaagctgcggtaactaag
cctattactacaggtgcacctgctagcagccgtggccgcattaatgcatctgcgccaatg
gcagcacctgcatcggttgatgatactttcaatgacgtagcgcttaccgctaagtctgat
gatagccgcccagccattgtagtatcgggtagaagcgcagctattgcgaaagcaagtgcc
gctgcatcagcaccaacaacactcccagccagtgttgatgaaaacgcctaa
DBGET
integrated database retrieval system
