Alteromonas stellipolaris LMG 21856: AOR13_1897
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Entry
AOR13_1897 CDS
T04153
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
asp
Alteromonas stellipolaris LMG 21856
Brite
KEGG Orthology (KO) [BR:
asp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asp03019
]
AOR13_1897
Enzymes [BR:
asp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOR13_1897
Messenger RNA biogenesis [BR:
asp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOR13_1897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ResIII
NACHT
T2SSE
nSTAND3
HA2_N
NTPase_1
AAA_23
SLFN-g3_helicase
ABC_tran
AAA_25
SRP54
Motif
Other DBs
NCBI-ProteinID:
ALM90927
LinkDB
All DBs
Position
complement(2182811..2186821)
Genome browser
AA seq
1336 aa
AA seq
DB search
MSSPNAPSSLVAFQIKPLYTQLDDCLSADKFPLKRRIQQFAKQLNSGENAKENNSDASVD
NPQTKLATRYEKLANDIQASKDKRAFRLKNLPEVTYPPLPVSDKKDDIKAAIAANQVVIV
AGETGSGKTTQLPKICLELGRGVSGMIAHTQPRRLAARSVATRIAEELNTPLGEKVGFKI
RFSDQVSERSYVKLMTDGMLLAEMQNDRFLNQYDTIIIDEAHERSLNIDFLLGYLRQLLD
KRPELKLIITSATIDPERFSKHFNNAPIIEVSGRTYPVEIRYHSPEDNENDTDQTDAIVG
AVDELLTEKPGDILVFLSGEREIRDTQDALMRRQYRNTEIVPLYARLSAAEQNRIFQSHT
GRRIVLSTNVAETSLTVPGIKYVIDPGVARISRYSARSKVQRLPIEAISQASANQRAGRC
GRVSDGICIRLYSEDDYLGRPEFTDPEILRTNLASVILQMLALGLGDIADFPFVQPPDNR
NINDGFRLLEEIQAIVKQKGRMQLTKMGRQIARLPIDPRYARMVVEAQRTNALMEVMVIA
AGLSIQDPRERPQDKRQQADEKHSEFTDKDSDFISLYNLWDAFKAQQNELSQNHLRKWCK
SQFINYLRMREWQDIVSQLKKSVAELGFGIVKNEPDYQAIHEAIASGLLSHIGFKDKDRE
YLGSRNTRFMIFPGSGLSKSQPKWVMAAELVETSKLFARMVAKIDPAWIESLAGHVSQHS
YSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDPPVCHELFIREGLVEGNTRLNF
GFLKENQALLEQADEFEQKTRRRDLLVDDDELVRFYASRIPVEANNEAAFKKWYKNQEAF
AKQAGGEKSGAKKISDVLTFTEDDVYRQQPGQAIENAFPDAWRQGNITMGLRYHFEPNAD
DDGVSVIIPLPVLNQVENIGFDWQVAGLRHERIVSMIRTLPKRLRRNFVPAPNFADACIA
DISETDKNGRPISLVEAVTAKLRKMTGITVEEDEWNLSQLDRHLIMHFTVVNDKGDTIAR
SDDLHALKLQCAGQVKETFEKAATPELERSGIESWDFDTLPTTFAQKMGGFEVQAFPALV
EKGDKVDIALIDEPEKAQSMHRKGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYFNPFGQI
KALIDDCIFAGIDALVGEYCEKHNTEIRNKADFDTCVDIVRAEINDKVLEIAKQVEQGLT
LAHQCQKQMKGNVPLNMINALGDCKGHLSSLVFPGFVSDIGEARLNDWNRYIKGLSRRLE
KLPIDPNKDRMHQLTVEKAVSEWEKACGKYPKGKVPQALLDARWMIEELRVSLFAQALGT
AYPISAKRISLFLADF
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcacctaacgcgccttcgtcgcttgtcgcttttcagattaaaccgctttataca
caactcgatgattgtctttcggcggataaattcccattaaaacggcgcattcagcagttc
gcgaagcagcttaatagtggtgaaaatgcaaaggaaaataacagcgatgcttctgtcgat
aacccgcaaactaaattagccactcgatacgagaaacttgcgaacgatattcaagcatca
aaagataagcgtgcgtttaggctgaaaaatttaccagaagttacctatccgccgttgccg
gtgagcgataaaaaagacgacataaaagccgcgattgccgcgaatcaggtggtgattgtt
gcaggtgaaaccggctcgggtaagactacccagttaccgaaaatatgcttagagcttggc
cgtggtgttagtggcatgattgcccatactcagccacgtcgattggctgcacgcagtgta
gctactcgtattgctgaagagctcaatacccccttaggtgaaaaggttggttttaaaatt
cgctttagcgatcaggtaagtgagcgaagctacgtaaaattaatgacagacggtatgttg
ctggcagaaatgcaaaacgaccgttttttaaatcaatacgacaccattattattgatgaa
gcccacgaacgcagcttaaacatcgacttcttactgggttatttaaggcagctattagac
aagcgccctgaacttaaactgattatcacctcggccactatcgaccctgaacgtttctcg
aagcactttaataacgcgcctattattgaagtgagtgggcgtacgtatccggtagaaatt
cgctaccacagccctgaagacaatgagaacgatactgaccaaaccgatgccattgtaggt
gcggtagatgagctattaaccgagaagccgggcgatattttagtgttcttaagtggtgag
cgggaaattcgtgacacccaagacgccttaatgcgcaggcaataccgaaacaccgaaatt
gtgcctttgtatgcgcggctttccgccgctgaacaaaatcgtattttccagtctcacacc
ggtaggcgcattgtgctgtctaccaacgtggcagaaacctcattaacggtgccgggcatt
aagtatgtaatcgacccaggcgtggcccgtatttcacgctacagcgcacgcagtaaagta
cagcggttgcctatagaagctatatcgcaggcgtctgcaaatcagcgggctgggcgatgc
gggcgtgtgtcagacggtatttgtattcgtttgtatagtgaagatgattatctcggccgc
cctgaatttaccgacccagaaatactgcgtactaatttggcctcggttattttgcaaatg
cttgcgttggggttaggggatattgccgattttccgtttgttcagccgccagataaccgc
aacatcaacgacggctttagattactagaagaaattcaggccatcgtgaaacaaaaaggc
cgcatgcagcttaccaaaatgggcaggcagattgcccgcttacctatcgacccgcgctac
gcccgtatggtagtagaagcgcagcgtaccaatgcgttgatggaagtgatggtaattgcg
gcagggctatctattcaagaccctcgtgagcgaccacaagacaaacgccaacaagcagat
gaaaagcacagcgaatttaccgataaagattcagactttattagtttgtataacctgtgg
gatgcgtttaaagcgcagcaaaatgaattaagccagaatcatctgcgcaaatggtgtaag
agccaatttatcaactatttgcgtatgcgcgaatggcaagacattgttagccaactgaaa
aagtcggtggcagaacttggctttggaattgtgaaaaacgagccagattatcaagctatt
cacgaagccattgcaagtggattgctatcgcatattggttttaaagataaagacagagaa
tacttaggctcgcgcaatacccgctttatgatatttccaggttctggtctttctaagtca
cagcctaaatgggtaatggcggcggaattagtagaaacctctaaattatttgcacgcatg
gtggcgaaaattgaccccgcgtggattgagtcattagcaggacatgttagtcaacacagc
tattcagagccccattggtctaaaaagcgtggcgcggttatcgcgtttgaaaaagtgacg
ctgtttggcttacccatcgtgatgaaacgagccaaagtgtatagcttaattgatccacca
gtatgtcatgaactctttattcgtgaaggcttagttgagggtaatacacggcttaacttt
ggtttcttaaaagaaaaccaggcgttactcgagcaagccgatgagtttgaacaaaagacc
cgacgcagagatcttttggttgatgacgacgaattggtacgtttttacgcctcccgtatt
cctgtagaagcgaacaacgaagcggcgtttaagaaatggtacaaaaaccaagaagccttc
gctaaacaagcgggcggagaaaagtcgggtgccaaaaaaataagcgacgtacttactttt
accgaagatgacgtatatcgccaacagcctggccaagctatagagaatgcgtttcctgat
gcgtggagacagggaaacatcaccatgggactgcgttatcattttgagccgaatgcggat
gatgatggtgttagtgtgattattcctttgccagtactcaatcaagtagaaaacattggc
tttgattggcaagtagcagggctaaggcatgaacgtatagtatcgatgatcagaaccttg
ccaaagcgtttgcgccgcaactttgtacctgcgcccaactttgctgatgcctgtattgcc
gatatcagcgagacggataaaaacggccgtccaattagtcttgtagaggccgtaactgcc
aagcttcgtaagatgacaggtatcaccgtagaagaagacgagtggaacttgtcgcagctt
gacagacacctaatcatgcactttacggtagtgaacgataaaggcgacacaatcgcccgt
tctgacgacctacacgccctaaaactgcaatgtgctgggcaagtgaaagaaacttttgaa
aaagcggccacgccggaacttgagcgaagtggtatcgaaagctgggatttcgacacactg
ccgactacctttgcgcaaaagatggggggctttgaagtgcaagctttccctgcattggta
gaaaagggcgataaggtagatattgcgcttatcgacgagcctgaaaaagcgcaatctatg
caccgaaaaggtgtgaacgtgttgataaaaaacgccatgccgtcgccacttaattactta
cagagtaagctgcccaataaagctaagttggggctttacttcaatccgtttgggcaaatt
aaagcgcttattgatgattgtatttttgccggtatagacgcgctggtgggggaatactgt
gaaaagcacaatactgaaattcgtaacaaggctgattttgatacctgcgtagatatcgtg
cgggcagaaattaacgacaaagtactagaaatagctaagcaggtagagcagggcttaacc
cttgcacatcaatgtcaaaagcaaatgaaaggtaatgtgcccctcaacatgataaacgca
ttgggcgattgcaaagggcatctttcaagcttggtgttcccaggctttgtatctgatatt
ggtgaagcacgacttaacgattggaaccgttatattaaagggttatctcgtcgtttagaa
aagctaccgattgatccgaacaaagaccgaatgcatcagctcacggtagaaaaggcggtc
agtgagtgggaaaaagcctgtggtaaatacccgaaaggcaaagtaccacaagcgttattg
gatgcacgttggatgattgaagaattaagggtgtctttatttgcgcaagcattaggtacg
gcttaccccatatcggcaaagcgtatctcactgtttttagctgatttctaa
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