| Entry |
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| Name |
(GenBank) Transcription-repair coupling factor
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| KO |
| K03723 | transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] |
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| Organism |
asp Alteromonas stellipolaris LMG 21856
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:asp00001]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOR13_1935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:asp03400]
AOR13_1935
Enzymes [BR:asp01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOR13_1935
DNA repair and recombination proteins [BR:asp03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOR13_1935
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2238223..2241675
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| AA seq |
1150 aa
MQDHKQWGQLQGSSAALCITQAQAQYNGPIVLVTADTPSALKLEKELAFFMPSNKAEQPN
VPITVFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQVNGIFIVPVNTLMQRLAPTDYLA
KYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLFPMGSDKPFRIDL
FDDEVDSIRFFDTETQRSGDAVEKIKLLPAREFPTDKESITLFRQRFLEKFDANNASESV
FSQVTKGTMPSGVEYYLPLFFDKTATLFDYLHPKSVLLLHGDVQDASEFFWADIQERYEQ
HRYNPARPLLPPEDLFLPINTLFGEIKQWPRVSLSKEIIEEKPGSFNLGCDKLDDIAINT
QKKVPAEQLIATVNNAKKRGAKVLFCAETQGRREGLLTVLQKAGIKPKAAESFNSFVSAS
DNIGITVGMVENSFNWRSDSGELLFITETELLGHKVSQRRLRDKRTATDESAIIRNLAEL
TTGQPVVHLDHGVGRYIGMQTLDAGGVTTEYLCIEYAKQAKLYVPVASLHLISRYTGGDA
DHAPLNSLGTDAWSKAKQKAAEKVRDVAAELLDVYARRAAKPGFAYNIDWDDYQKFSDSF
PFEETPDQAQAIAAVIHDMGSPQAMDRLVCGDVGFGKTEVAMRAAFLAANQGKQVAILVP
TTLLAQQHHENFKDRFAAWPFEIEVMSRFVSAKGQKETMQRLADGKVDIVVGTHKLLSND
IKFSDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TAPARRLSIKTFVQQRNKAIIREAIMREILRGGQVYFLHNEVDTIARTAEEIAEIVPEAR
IAMGHGQMRERELENVMSDFYHQRYNVLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAISKLEDLGAGFALATHDLEIRGAGE
LLGDDQSGQIASIGFSLYMDMLDRAVTSLKEGKEPSLDDAMAGHTEVELRIPALLPDDYI
ADVNTRLSLYKRLASCKNQDDIDEFQVECIDRFGLLPEPAKNLVEVAEIKIKAEAIGVLK
VDLSAQGGTIEFTDTTKVDPGYIIQLVQTKPNTFKFEGSQKLRLVKQTDTAKARIAFISD
IIADLAKESR |
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| NT seq |
3453 nt +upstreamnt +downstreamnt
gtgcaagaccacaagcaatggggtcagttacaaggcagcagcgccgcactgtgcatcact
caagcacaagcccaatacaacggccctattgtgctggtaacagccgacacaccttcggcg
ctaaaactagaaaaagagttggcgttttttatgcccagcaataaagctgagcaaccaaat
gtacctattacggtatttcccgattgggaaaccctgccctacgattcgttttctccacac
caagatattgtctcgcagcgcttagaaactttatttcgctttacccagcaggtaaatggt
attttcattgtgccggtaaacaccttgatgcaacgtttggcacctaccgactacctcgca
aaatatttgttgatgctgaataagggagacacccttgatagagaccaattcagacgcaac
ttagaacaagcgggctacttacacgtaagccaggtaatgagccacagtgaattttcggtg
cgcggtagcattatcgatttattccccatgggtagcgacaagccgtttcgtattgatttg
ttcgacgacgaagtagactctattcgctttttcgataccgaaacccaacggtctggcgat
gcggttgaaaaaataaagctgttgcccgcacgggaattccctaccgacaaagaatctatt
acccttttccgtcagcgctttttagaaaagttcgatgcgaacaacgcctcagaatcggtg
ttttctcaagtcacaaaaggcaccatgccaagcggcgttgaatattacttgccgctgttt
tttgataaaaccgctaccttgtttgattacctgcaccccaaaagtgtgctgttgttacac
ggtgacgtacaagatgccagcgagtttttctgggcagacattcaagagcgttacgaacaa
cacagatacaacccagcaaggcctttactgccacctgaagatttatttttacctataaat
accttgttcggcgaaattaaacagtggccgcgtgtatccctgtcaaaagaaatcattgaa
gaaaagccgggcagtttcaacttaggctgcgataagcttgacgatattgctattaacacc
caaaagaaagtaccggctgaacaattaattgccacggtgaacaatgccaaaaagcgcggt
gctaaagtgctattttgcgcagaaacccaaggccgccgtgaagggctgcttaccgtatta
caaaaggcgggcattaagcccaaagcggctgaatcgttcaactcgtttgttagtgccagc
gataacattggtattaccgtaggcatggttgaaaatagctttaactggcgaagtgatagt
ggcgaattgctgtttatcaccgaaaccgagctattaggccataaagtaagccagcgtagg
cttcgcgataagcgtacggctaccgacgaaagtgccattattcgcaacttggctgagctt
actaccggtcagcccgttgtgcatttagatcatggtgtgggccgttacattggcatgcaa
accctagatgcaggcggcgttaccactgaatacttgtgcattgaatacgccaagcaagcc
aagctgtatgtgcccgtagcgtcattacacctaatttcaaggtacacgggcggcgatgcc
gatcacgcaccgcttaattcacttggcactgatgcatggagcaaagctaaacaaaaagcg
gctgaaaaagtacgcgatgtggccgctgaattacttgatgtatacgcacgacgtgccgca
aagccaggctttgcttacaatattgattgggacgactaccaaaaattctccgacagcttc
ccgtttgaagaaacgccggatcaggcacaagctattgcggcggttattcatgacatgggt
agcccacaagccatggacagattggtatgcggtgacgtaggtttcggtaaaaccgaagtc
gccatgcgtgcggcattcttagccgcgaaccaaggcaaacaagtggctattttggtgccc
actaccctacttgcccaacagcatcacgagaactttaaagatagattcgccgcatggccg
tttgaaattgaagtcatgagtcgattcgttagcgctaaaggccaaaaagaaaccatgcag
cgccttgccgatggcaaggtagatattgtagtaggcacgcataagttgctgtcgaacgat
attaaattcagcgacttaggcttagtgatcattgatgaagagcatcgcttcggggtgcgt
caaaaagagaagctaaaatcccttcgcgccgatgtagatattcttacccttaccgctacg
cctattcctagaaccctgaatatggctatgtcgggtatgcgtgacttatcgattattgct
accgcgccagcaagacgtttatcaattaaaacctttgtacaacaacgcaataaagccatc
attcgtgaagctataatgcgtgaaattttacgtggtgggcaggtgtacttccttcacaac
gaagtagataccatagccagaactgccgaagaaattgccgaaattgtacctgaagcgcgt
attgccatgggccacggccaaatgcgcgaacgcgaacttgaaaatgtaatgagcgacttc
taccaccagcgctacaacgtgttggtgtgtaccaccattattgaaaccggtattgatgta
cccagtgctaataccatcataatggacagagccgatcacttaggcctagcccaattgcac
caattgcgtggccgtgtggggcgttcacaccaccaagcctacgcttatttacttacgccg
catcctaagcgtatgaccaaagacgcagctaagcgactagacgctatttctaaacttgaa
gatttaggggcaggttttgcgctagccacccacgaccttgaaattcgtggcgcaggtgaa
ctattgggcgatgaccagtctggccaaattgccagtatcggatttagcctttacatggat
atgctagatagagcggtaacatcactaaaagaaggcaaagagccttcgctagacgatgcc
atggcaggccacacagaagttgagcttcgtattcctgcccttctgcctgatgactatatt
gctgacgtaaacactaggttatcgctatataaacgcttagccagctgtaaaaaccaagac
gatatagacgaattccaagtagaatgtatcgaccgcttcggtttattgcctgaacccgct
aaaaacttagtagaagtggcggaaataaaaataaaagcagaagctataggcgtgcttaaa
gtagacttgtcagcacaaggcggtaccatagagtttacagataccaccaaggttgaccct
ggctatattattcagcttgtacaaaccaagccaaatactttcaaatttgaaggcagccag
aaactacgattagtaaaacagactgataccgcaaaagcgcgcattgcgtttattagcgat
atcattgccgaccttgcaaaggagtcgcgataa |
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