Alteromonas stellipolaris LMG 21856: AOR13_2816
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Entry
AOR13_2816 CDS
T04153
Name
(GenBank) tRNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
asp
Alteromonas stellipolaris LMG 21856
Pathway
asp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
asp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AOR13_2816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asp03021
]
AOR13_2816
Transcription machinery [BR:
asp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AOR13_2816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
SQS_PSY
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
ALM91820
LinkDB
All DBs
Position
3252792..3254618
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AA seq
608 aa
AA seq
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MAQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVDSDQIEDIIRMINDMGIQVSESAP
DSDELLMQEATADEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEDGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRISDIISGFVDPNDDQDLAPTATH
IGSELSEEELEDEDDDDDEEDEDEGGVDPELARAKFGALRDQYIKARDVIEKKGRSHAAA
REQINALSEVFKEFRLVPKQFDRMVKNMRSMMDKVRIQERLVMKFCVVNAKMPKKDFIKA
FAGNETSSAWLTKAIKANAAYSDALAVNKEEIERCISKMNQVEQETGLVIADIKDINRRM
SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSE
RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKDATQ
EVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE
QLRSFLDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagcaagcagtctcagattaaactcctgattgcaaaaggtaaagagcaaggt
tacttaacctttgcagaagttaacgaccacctgccgcaagatattgtcgattctgatcaa
attgaagatattatccgcatgatcaacgacatgggaattcaagtttctgaatctgctcca
gattcagacgaacttctcatgcaagaagcaaccgccgatgaagacgcagctgaagctgcc
gctcaagcgcttgctacagtagaaagcgaaattgggcgtaccaccgaccctgtgcgtatg
tatatgcgtgaaatgggtacggtagaacttcttactcgtgaaggcgaaatcgaaattgcc
aagcgtatagaagatggtattaatcaggttcagtgctctgttgctgaatatcctgaagca
atcacctatttgctcgatcaatgggatttgtacgaagcagaagaaattcgcattagcgac
attatttcgggctttgttgacccgaatgatgatcaagatcttgctcccacggccacgcat
atcggctctgaactttcagaagaagaactggaagatgaagatgacgacgatgatgaagaa
gacgaagatgaaggcggtgtagatcctgaactagcacgcgctaagtttggtgcccttcgt
gatcagtacatcaaagcacgtgacgttatcgagaagaaaggtcgctctcatgctgccgct
cgtgagcaaatcaatgcattgagtgaagtcttcaaagaattccgtctagtgcctaagcaa
tttgatcgtatggttaaaaacatgcgttcaatgatggacaaagtgcgtatccaagaacgt
cttgttatgaagttctgtgtggttaacgccaaaatgcctaagaaagattttatcaaggca
tttgcaggaaacgaaacgtcttctgcttggttaacaaaagcgattaaagctaacgctgcg
tactctgatgcattagccgtcaataaagaagaaatcgaacgctgtattagcaaaatgaac
caggttgaacaagaaactggtttagttattgctgatatcaaagacatcaaccgtcgtatg
tcaattggtgaagcaaaagctcgccgtgcgaaaaaagagatggttgaagctaacttacgt
ttggttatttcaattgctaagaaatacacgaaccgtggtttgcagttccttgaccttatt
caggaaggtaacatcggcctgatgaaggcagtagataagtttgaatatcgccgtggttat
aagttctcaacttatgctacttggtggattcgtcaggcaattactcgttctattgccgac
caagcgcgtactatccgtattcctgtacacatgatagaaacgattaacaaacttaatcgt
atttctcgtcaaatgttgcaagaaatgggtcgtgagccaacacctgaagaattgtctgaa
cgcatgcttatgccagaagacaaaattcgtaaagtgttgaaaattgctaaagagccaatc
tcaatggaaacgccaattggtgatgatgaagattcgcacctaggcgattttatcgaggac
agcaccattattcagcccctcgattctgcgaccggcggtagccttaaagacgcaacacaa
gaagtgttggcagggcttacagcacgtgaagcgaaagtacttcgtatgcgtttcggtatc
gacatgaatactgaccacacacttgaagaagtgggtaagcagtttgacgttacccgtgag
cgtattcgtcagattgaagcgaaggcattgcgtaagctacgtcatcctagccgctctgag
cagctacgaagcttcttagacgagtag
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