Alteromonas stellipolaris LMG 21856: AOR13_2882
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Entry
AOR13_2882 CDS
T04153
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asp
Alteromonas stellipolaris LMG 21856
Pathway
asp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOR13_2882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asp03019
]
AOR13_2882
03009 Ribosome biogenesis [BR:
asp03009
]
AOR13_2882
Enzymes [BR:
asp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOR13_2882
Messenger RNA biogenesis [BR:
asp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOR13_2882
Ribosome biogenesis [BR:
asp03009
]
Prokaryotic type
rRNA helicases
AOR13_2882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
HEM4
AAA_30
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALM91886
LinkDB
All DBs
Position
3328868..3330634
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AA seq
588 aa
AA seq
DB search
MTTTVDMTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPA
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRI
MEVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDIL
VATDVVARGLDVERVSHVVNYDVPYDSESYVHRIGRTGRAGRQGDAILFISHREKRMLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVIEATQDDSIETLIPLVEMIKEEAEASPE
VLMAALLKIAQGDEPLILKESDRPDLHSKPPRDSREPRGDRRDGRGDGRERKPRAPRTSR
KPEAGMQRFRIDVGHTHGAKPGNIVGAIANEGNMDSKHIGAIEIYDNFSTVDLPEGMPKE
TKDKLQGTRVAGQRLSIREWSDTPPAKRERGDNRGENRSRDNRARRKS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagatctaaaactaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtcacctattcaagccgagagtattccatta
ctgcttgaaggtcacgacttactcggtcaggcccagacagggacaggaaaaaccgcagcg
tttgcccttccaatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ctagcacctactcgcgaattagcgattcaggtagcagaagcgttccaagtgtacgctagt
ttcagccataaaattaaagtactgcctgtttacggcggtcaatcttacgacaatcaaatt
cgccagcttaaacgcggcgttcaagttgtagtaggtacacctggtcgtgtaatcgaccat
atcaaacgtaaaacgttggatttaagcgaacttaaattccttgtacttgatgaagccgac
gaaatgctgcgcatgggcttcattgatgacgttgagcttattttgagccacgcgccagct
gaacgccaaacagcgttgttctcggccactatgcctggtccaattaagaagattactcag
cgttatcttaaagatcctaagcacgtaaaaattgcgtctaaggtaagtactgcaagtact
atccgtcaacgttactgccaagtagcgcctcatcataagcttgaggcacttacgcgtatc
atggaagtagagcgttttgacggcatgattattttcgtgcgtactaaaacagcgactgtt
gaacttgctgataaactttctgcacgtggatacgatgttgaaccgctaaatggtgatatt
cctcagaacgctcgtgagcgtactgttgataaacttaagcaaggtaacattgatatctta
gtagcaactgatgttgttgcacgtggtcttgatgttgaacgtgttagccacgtagttaac
tacgacgtaccttacgatagtgaatcttatgttcaccgtattggtcgtactggccgtgct
ggacgtcaaggtgatgcaatacttttcatctctcatcgtgaaaagcgtatgcttttctct
atcgagaaaacgactaagcagccaattgaagcaatgccaattccttcaattagtgaaatc
aacgaaactcgcttaagccgtttcaagcaatctgttattgaagctacgcaagatgacagc
attgaaacgcttattcctttggttgagatgattaaagaagaagctgaagcttctcctgaa
gtgcttatggcagcattgcttaagattgcacaaggtgatgagccgcttatccttaaagaa
agcgaccgccctgatcttcacagcaaaccacctcgtgacagccgtgaacctcgtggcgat
cgcagagatggccgcggcgacggtcgtgaacgtaagcctagagcgcctcgcactagtcgt
aagccagaagctggtatgcagcgcttccgcatcgacgtaggtcatacacacggtgctaag
cctggtaatattgtcggcgcaatcgcaaacgaaggtaacatggattctaagcacattggt
gctatcgaaatttatgataacttcagtactgttgatttgcctgaaggcatgccaaaagag
actaaagacaagcttcaaggtactcgcgtagcgggtcagcgtttgtcgattcgcgaatgg
tcggatacaccaccagcgaaacgcgagcgtggcgacaaccgtggtgaaaaccgcagtcgt
gataaccgcgcacgtcgcaagtcgtaa
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