Alteromonas stellipolaris LMG 21861: AVL57_02215
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Entry
AVL57_02215 CDS
T04545
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL57_02215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asq03019
]
AVL57_02215
03400 DNA repair and recombination proteins [BR:
asq03400
]
AVL57_02215
Enzymes [BR:
asq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVL57_02215
Messenger RNA biogenesis [BR:
asq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL57_02215
DNA repair and recombination proteins [BR:
asq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AVL57_02215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
GARS_N
Motif
Other DBs
NCBI-ProteinID:
AMJ72891
UniProt:
A0AAW7Z5I3
LinkDB
All DBs
Position
complement(241853..243691)
Genome browser
AA seq
612 aa
AA seq
DB search
MTTVIADTTISSPVFDALTPENVLKNVFGYDEFRDGQGDVIHHVCKGGDALVLLPTGGGK
SMCYQIPALIRAGTGIVVSPLISLMQDQVEQLKALGVKAAYLNSTLSQEEQASISEQMVS
NQLDLLYVSPERLLQFGFQQTLRTTDVALFAIDEAHCVSHWGHDFRHDYRALGQIKARFP
DIPVIGLTATADIATQSDILTQLQLNDPLVYKGSFDRPNIRYRVMSKYKAFEQVVSYVKQ
QEGSGIIYCNSRAKVDDLHAKLFKQGFRCAAYHAGMDADERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEAMLLFDEKDAARVRQWIEQ
GEQADRNAIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLDPPTMIDGLV
ISQKVLSCILRLSQQASTQYLIDVLRGKQLKRLQEAGHHQLSTYGIGKDKSDSYWHNMIN
QLIHKGLIRVDITANAALRLTEAARPVLKGEVAVQLAVPRLEFKPDKKAKQAPANYDRTL
FMRLKHLRKVLAEENEVPPYVVFSDATLVDMAAKLPTTRDTMLDVSGVGQTKLSRYGDAF
MQLINDYIHREQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgactactgtaattgccgacaccactattagttctcccgtttttgatgcgctaacccct
gaaaacgttttaaaaaatgtgttcgggtacgacgaatttcgcgatggacaaggagacgtc
atccaccatgtgtgcaaaggtggagatgcacttgtattgctacctaccggtggtggaaaa
tcaatgtgctaccaaataccagcgcttatccgcgcgggtactggcattgtggtgtcgccg
cttatctcgttaatgcaagatcaagtagaacagttaaaagccttgggggtgaaggccgct
tacctgaattcaacacttagtcaggaagagcaagccagcatttcagagcaaatggtgtct
aatcagctagatttattgtatgtctcccctgagcgcttgcttcaatttggctttcagcaa
actcttcgaacaacagatgtcgccttgtttgctatcgatgaagcgcactgcgtatcccat
tgggggcatgatttcaggcatgactaccgtgcactcggccagattaaagcccgctttcct
gatatacctgttattgggttaacggctacagctgacatcgctacccaaagcgatatcctt
acccaactgcaacttaatgaccccttggtttataaaggcagcttcgatagaccgaatatt
cgttatcgggtgatgtcgaagtacaaagcctttgaacaagttgttagctacgttaagcaa
caagagggcagcgggattatttattgtaatagtcgcgccaaagtagacgacttacatgcc
aagctattcaagcaaggttttcgctgcgcggcttatcatgcgggtatggatgccgatgaa
cgagaactcgtacagcgtcaatttttgaacgataaaattgatattgtggtagccacagtc
gcttttggcatgggtattaataagtcgaacgtgcgttacgttgtacaccacgatgtacct
cgaagcgttgaaagctactatcaagaaacagggcgcgcgggacgagatggccttgagtct
gaggcaatgttgctgtttgatgaaaaagacgcagcccgggtacgtcagtggatagaacaa
ggtgagcaggccgatagaaatgccatcgaacttcaaaagtttgcggccatggaagcattt
tctgaagcccaaacctgccgtcgacaagtgctgcttaactacttttctcagtttagtgat
agcgcctgtggcaactgtgatatttgtctagatccacccaccatgattgacggcttggtc
attagccaaaaagtgctttcttgtattcttaggctttcgcagcaagcttctacgcagtat
cttattgatgtactgcgcggcaaacaactaaagcgcttgcaagaagcaggtcaccaccag
ctttcaacgtatggaattggcaaagacaaatctgacagctattggcacaacatgattaac
caacttattcataaggggttaatacgggttgatattaccgccaacgcagcacttcgatta
acagaagctgcccgcccggtgttgaaaggggaagttgcggtacaactcgcggtgcctaga
ttagagttcaagccagataaaaaggccaaacaagcaccggctaactacgaccgcacctta
tttatgcgcttgaagcacctacgtaaagtactggcagaagaaaacgaagtgccgccgtat
gtagtattcagtgatgctacactggtagacatggccgctaagctaccgaccacccgtgac
actatgctagatgtaagcggcgtaggccaaaccaaactatcgcgctatggcgacgccttt
atgcagttgataaacgattacattcatcgcgagcagtag
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