Alteromonas stellipolaris LMG 21861: AVL57_03085
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Entry
AVL57_03085 CDS
T04545
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
asq03016
]
AVL57_03085
Enzymes [BR:
asq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AVL57_03085
Transfer RNA biogenesis [BR:
asq03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AVL57_03085
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AMJ73049
LinkDB
All DBs
Position
complement(463021..463689)
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AA seq
222 aa
AA seq
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MRCFIGLDLHSTEKLALDSWRQQALPEVTARNMFTLSESRAQNEGRGKKGKESKGKRRDA
GASQPYAVNAANYHMTLCFLGSITHRQHEALVAELDTLVHSPFSLTLDTTGIWNGPKILF
AAPESPPAELMALAKSTRKAARAAAIEVDGKGFAPHVTVIRKATVALPVPLYTPHVEMHA
SAFHLFESVSTPQGVTYPIRQSWNLRHNMSVREKLRRGINDE
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgtttcattggtttagatttacattcaacagaaaagttagcccttgatagttgg
cggcaacaagccctcccagaggtgacagcccgcaacatgttcactctttctgagagccga
gcccagaatgagggtagagggaaaaaaggtaaagagagcaaaggtaaaaggcgtgacgca
ggcgcatcccaaccttatgcagtaaacgcagccaattaccatatgaccttatgttttctt
ggctctattactcatcgtcagcatgaggccttggttgccgaactcgatacgctagtacat
tcgccattctccctaacgctagacactaccggtatttggaacggcccaaagattctcttc
gccgcaccagagtcaccgccagcagaacttatggcattagctaaatcgactcgcaaagcc
gcgagagccgcggcaatagaggtagatggcaaagggtttgcgccccatgtcactgttatt
cgaaaagccacggtggcgcttcctgtacctttgtatacaccacatgtagagatgcacgcc
tcggcatttcacctgttcgaatctgtctcaaccccccaaggggttacgtaccccattagg
caaagttggaatttaaggcacaatatgtcggtgcgtgaaaagctacgccgaggaattaat
gatgagtag
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