Alteromonas stellipolaris LMG 21861: AVL57_03585
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Entry
AVL57_03585 CDS
T04545
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL57_03585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asq03019
]
AVL57_03585
Enzymes [BR:
asq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AVL57_03585
Messenger RNA biogenesis [BR:
asq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL57_03585
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMJ73139
UniProt:
A0AAW7Z6W5
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All DBs
Position
complement(578328..579635)
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AA seq
435 aa
AA seq
DB search
MPTHLTDTHFSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTI
AFLVATFHYLLSKADNDENSKSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYG
GEGYQSQRETLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIR
FLFRRLPPATERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSD
DDKMLLLLSLFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILE
DFTKGKLDILVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFA
CEKYALNLPAIEQYIQQAIPVTDYDASALLDDVNAPKARRRRTPNTRNSSRRGNGKGRGN
SGGNRGKPSNRGNSN
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcacttaactgatactcatttttccgacctgccgattaatagcaaggttgtt
gacgccttaacggcggcaaatttcaataattgtacaccaatacaggcgttatctctgcct
ccgttacttgaaggcttagatattgccggacaagctcaaacgggtacaggtaaaactatt
gccttcttggttgctacttttcattatttgctaagcaaagcagataatgacgagaacagc
aaatcaaaaggccctcgagccataataatggcaccaacgagagagttagccgttcagatt
ttcaacgatgccaaactgctcagtgagcataccggtttatcgcttggattgatttatggg
ggcgaaggttaccaaagtcaacgggaaaccctagaagaaggggtagatattattattggt
acgacaggacgcattctggattattacaaacagaacgtgtttaccttgaataatattcaa
gttgccgtacttgatgaagccgatcgtatgttcgatttaggctttattaaagatatccgc
tttttgttccgtcgcttgccgcctgctacagaacgtctaagtatgctgttttccgctaca
cttagttatcgcgttcaagaactcgcttacgagcacatgaacaacccgactcacgttcaa
gttgcgccagagcaaacgacggcgactcgggtatcgcaagagctgttctatccttctgat
gatgacaagatgctactgcttctttcattatttgaagaagaatggccagataaagccatt
gtgtttgctaataccaaatacagctgtgagcgcgtgaccgactggcttactgccgatggt
catcgtgttggcttattaagcggtgatgtaccacagaaaaaacgcttaggtatattggaa
gactttaccaaaggtaagctagacattttagtggctacggatgttgccgcacgtggctta
catattgattctgtcacccatgtgtttaactacgatttacctgacgatgcagaagactat
gttcaccgtattggtcgaaccggtcgtgctggtcaaagcggtattgcgattagttttgca
tgtgaaaaatatgcattgaatttacctgcgattgagcagtatattcaacaagcaatccct
gtgactgactacgatgctagtgccttacttgatgacgttaatgcgcctaaagctagacgc
agacgcacgccaaacacgagaaactcgtctcgacgtggtaatggtaaaggtcgtggtaac
agcggtggaaatagaggtaaaccgtctaatcgcggaaacagtaactaa
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