KEGG   Alteromonas stellipolaris LMG 21861: AVL57_04380
Entry
AVL57_04380       CDS       T04545                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
asq  Alteromonas stellipolaris LMG 21861
Pathway
asq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AVL57_04380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asq03019]
    AVL57_04380
   03009 Ribosome biogenesis [BR:asq03009]
    AVL57_04380
Enzymes [BR:asq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AVL57_04380
Messenger RNA biogenesis [BR:asq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AVL57_04380
Ribosome biogenesis [BR:asq03009]
 Prokaryotic type
  rRNA helicases
   AVL57_04380
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 HEM4 AAA_30 AAA_19 Cas3-like_C_2 AAA_22
Other DBs
NCBI-ProteinID: AMJ73275
UniProt: A0AAW7Z0E4
LinkDB
Position
complement(766087..767853)
AA seq 588 aa
MTTTVDMTFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPA
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRI
MEVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDIL
VATDVVARGLDVERVSHVVNYDVPYDSESYVHRIGRTGRAGRQGDAILFISHREKRMLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVIEATQDDSIETLIPLVEMIKEEAEASPE
VLMAALLKIAQGDEPLILKESDRPDLHSKPPRDSREPRGDRRDGRGDGRERKPRAPRTSR
KPEAGMQRFRIDVGHTHGAKPGNIVGAIANEGNMDSKHIGAIEIYDNFSTVDLPEGMPKE
TKDKLQGTRVAGQRLSIREWSDTPPAKRERGDNRGENRSRDNRARRKS
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgacaacaactgtcgacatgacatttaaagatctaaaactaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtcacctattcaagccgagagtattccatta
ctgcttgaaggtcacgacttactcggtcaggcccagacagggacaggaaaaaccgcagcg
tttgcccttccaatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ctagcacctactcgcgaattagcgattcaggtagcagaagcgttccaagtgtacgctagt
ttcagccataaaattaaagtactgcctgtttacggcggtcaatcttacgacaatcaaatt
cgccagcttaaacgcggcgttcaagttgtagtaggtacacctggtcgtgtaatcgaccat
atcaaacgtaaaacgttggatttaagcgaacttaaattccttgtacttgatgaagccgac
gaaatgctgcgcatgggcttcattgatgacgttgagcttattttgagccacgcgccagct
gaacgccaaacagcgttgttctcggccactatgcctggtccaattaagaagattactcag
cgttatcttaaagatcctaagcacgtaaaaattgcgtctaaggtaagtactgcaagtact
atccgtcaacgttactgccaagtagcgcctcatcataagcttgaggcacttacgcgtatc
atggaagtagagcgttttgacggcatgattattttcgtgcgtactaaaacagcgactgtt
gaacttgctgataaactttctgcacgtggatacgatgttgaaccgctaaatggtgatatt
cctcagaacgctcgtgagcgtactgttgataaacttaagcaaggtaacattgatatctta
gtagcaactgatgttgttgcacgtggtcttgatgttgaacgtgttagccacgtagttaac
tacgacgtaccttacgatagtgaatcttatgttcaccgtattggtcgtactggccgtgct
ggacgtcaaggtgatgcaatacttttcatctctcatcgtgaaaagcgtatgcttttctct
atcgagaaaacgactaagcagccaattgaagcaatgccaattccttcaattagtgaaatc
aacgaaactcgcttaagccgtttcaagcaatctgttattgaagctacgcaagatgacagc
attgaaacgcttattcctttggttgagatgattaaagaagaagctgaagcttctcctgaa
gtgcttatggcagcattgcttaagattgcacaaggtgatgagccgcttatccttaaagaa
agcgaccgccctgatcttcacagcaaaccacctcgtgacagccgtgaacctcgtggcgat
cgcagagatggccgcggcgacggtcgtgaacgtaagcctagagcgcctcgcactagtcgt
aagccagaagctggtatgcagcgcttccgcatcgacgtaggtcatacacacggtgctaag
cctggtaatattgtcggcgcaatcgcaaacgaaggtaacatggattctaagcacattggt
gctatcgaaatttatgataacttcagtactgttgatttgcctgaaggcatgccaaaagag
actaaagacaagcttcaaggtactcgcgtagcgggtcagcgtttgtcgattcgcgaatgg
tcggatacaccaccagcgaaacgcgagcgtggcgacaaccgtggtgaaaaccgcagtcgt
gataaccgcgcacgtcgcaagtcgtaa

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