Alteromonas stellipolaris LMG 21861: AVL57_08045
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Entry
AVL57_08045 CDS
T04545
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL57_08045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asq03019
]
AVL57_08045
03009 Ribosome biogenesis [BR:
asq03009
]
AVL57_08045
Enzymes [BR:
asq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AVL57_08045
Messenger RNA biogenesis [BR:
asq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVL57_08045
Ribosome biogenesis [BR:
asq03009
]
Prokaryotic type
rRNA processing factors
AVL57_08045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMJ76341
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All DBs
Position
1622240..1625530
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AA seq
1096 aa
AA seq
DB search
MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEIARTYFPKGYRFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFLSLA
GSYLVLMPNNPRAGGISRRIEGDERTELKESLNKLDLPDGMGLIVRTAGVGKSYEELEWD
LKVLLTHWEAISKVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQH
IQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMK
DAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGDSAHHVCPRCSGHGTIRGTESLALSIL
RILEEESIKENTGQIEAQLPVSVATYLLNEKRKAIQSLEKRHGVNLLLIPNANLETPHYQ
VTRRRPDDILDDASYEVELMPTVETETETTTSAPVKREEPALKGLVAPTAAPVVAPKAEA
PEAKAESSPSLFARIGKWLGDVLGGEDEKAKAEAEAKEKEKQKQSEGRNNRGGNQSRNRN
GDDRRRKPRKNTRRNQPQNKDGEQEQRTPRSEQDDKPRASNNKGRKPRKPRDETQKLKQE
QSRDNTQDEAPKTQDNKSQDAKPQEAQKKQEVAERRKRRDTRRSVRVKKDDNTQSNEAPA
SKPVKSLAVEKPKPAKAAPAETEEVNTAPVQSTDAPAASGSAAPVAQASQPAEVKSTTEQ
DAQSSSEQANNDTDENGQKRESRGRSRRSPRHVRAAGQRRKKEAQQSNDDNSAPVDEQST
ANVETTPSQEAPAADVSKSAPRAEDTQAAMPGKLEADTAHTQNENAQPATVDTAAENAEA
PTVAKTEDTQATKPGVLAPSEEKAAPATTETATAKPEAPKAETASEVVQDEMQFELASPK
SEADAPKPAKAEVTPAPVAEAAPKQVEINLGDDSAKAASETKTKPVPKANLKKAKAAVTK
PITTGAPASSRGRINASAPMAAPASVDDTFNDVALTAKSDDSRPAIVVSGRSAAIAKASA
AASAPTTLPASVDENA
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgcaactcaattagaagagttgcgtgttgcccttgttgatgggcagcgg
ttatacgatttggacatcgaaagtcctgggcacgaacagaaaaaagcaaacatttacaaa
ggtaaaataacccgcgttgagccaagcctcgaagcggcattcgtagactacggcgcagat
cgccacggtttcctacctcttaaagaaatcgctcgcacttacttccccaaaggctatcgt
ttcgaaggccgcccaaacatcaaagatgtcattaaggaaggccaagaagttatcattcag
attgataaagaagaacgtggtcaaaaaggcgcagcgcttactactttcttatcactcgca
ggtagctacctagtattaatgcctaacaaccctcgtgccggcggtatttctcgtcgtatc
gaaggtgatgagcgtacagaacttaaagaatctttgaacaaactagacctgcctgatggc
atgggcttaattgttcgtaccgcaggcgtagggaaatcttacgaagaattagagtgggac
ttaaaagtactacttacccattgggaagcaatttctaaagtggctgaagagcgtgaagcg
cccttcttaattcaccaagaaagtaacgtaattgtacgtgcaattcgtgactatttacgt
cgcgatattggtgaaatcttaattgataaaacaagcatctacgaacaagcattgcagcac
atccaacttgtgcgccctgactttgccaaccgcgtgaaactttatcgtggcgaagtacct
ttgttcagtcattatcaaattgagagccaaattgagtcggccttccaacgtgaagttcgc
ttaccttctggtggttcaattgttatcgaccctactgaagcacttacctctattgatatc
aactctgcccgtgcaacaaaaggcggtgatattgaagaaacagcactaaatacgaacctt
gaagcagctgacgaaattgctcgtcaacttcgtttacgcgacttaggtggcttggttgtt
atcgactttatcgatatgaccccagtacgtcaccaacgtgaagttgaaaaccgcatgaaa
gacgcggttcgcagcgatcgcgctcgcgttcagctaggccgtatctctcgctttggcttg
ctggaaatgtcacgtcagcgtttacgcccatcattgggtgattcagcgcaccatgtgtgc
cctcgctgttcaggtcacggcaccattcgtggtaccgagtcattagcactgtctattttg
cgtattcttgaagaagaaagcattaaagaaaacacaggccaaattgaagcacagcttcct
gtatcagtagcaacctatttgcttaacgaaaagcgtaaagcgattcaaagcttagaaaag
cgccatggcgttaacttattgcttatccctaacgccaaccttgaaacacctcactaccaa
gtaacacgccgccgtccagatgatattctagatgatgcaagctacgaagtagagttgatg
ccaacggttgaaacggaaactgaaaccacaacttcagcgccggttaaacgtgaagagcca
gcattaaaagggctagttgctcctaccgctgcgccagttgttgcacctaaagcagaagca
cctgaagctaaagctgaaagctcaccctcactctttgcccgcattggtaaatggttaggt
gatgtacttggcggtgaagacgaaaaagcaaaggcagaagctgaagcaaaagaaaaagaa
aagcagaagcaatctgaaggtcgcaacaaccgtggcggcaatcagtctcgcaaccgcaat
ggcgatgatcgtcgtcgcaaaccaagaaagaacactcgtcgtaaccagcctcaaaacaaa
gatggtgaacaagaacagcgtacgccacgttctgagcaagacgacaagccacgcgcgagt
aataacaaaggccgtaagcctcgtaaacctcgtgacgagactcagaaacttaagcaagag
caaagtagagataacacccaagacgaagcgcctaagacacaagataacaagtctcaagat
gctaagcctcaagaagcgcagaagaaacaagaagtggctgagcgccgcaaacgcagagat
actcgtcgcagcgtacgtgtgaaaaaagatgacaatactcagtcaaatgaagcaccggct
agcaaaccagttaaatctcttgccgttgagaaacctaaacctgctaaagcagcgcctgct
gaaactgaagaagttaatactgcgccagttcaatcaactgatgcaccagcagcttctgga
tcagcagcaccagtagcgcaagcctctcaaccagctgaagttaagtcgaccactgaacaa
gatgctcaatcttcttcagagcaagcgaacaacgacactgatgaaaatggtcaaaaacgc
gaaagccgtggccgttcacgtcgttctcctcgtcatgttcgtgctgctggtcagcgccgt
aagaaggaagcgcagcagtctaatgatgacaacagcgctccggtagatgaacagtcaact
gcaaacgttgaaactacgccttcacaagaagcacctgctgccgacgtgagtaaatcagca
cctcgtgcagaagatactcaagcggcaatgccaggtaaacttgaggcagatactgcgcat
actcaaaacgagaatgcccagccagctactgttgataccgctgccgaaaatgctgaagcg
cctactgttgctaagacagaagacactcaagccactaagcctggtgtattagccccatcg
gaagaaaaggcagcgcctgcgacaacagaaactgcaaccgctaagccagaagctccaaaa
gctgaaacagcatctgaagtcgttcaagacgaaatgcagttcgagttagcttcgccaaaa
agtgaagcggatgcgcctaagccagctaaagctgaagttactcctgcacctgtcgccgaa
gctgcacctaaacaggttgaaataaacctaggtgacgattcggctaaagcagcaagtgaa
actaaaactaagcctgtgccaaaagcgaaccttaagaaagcgaaagctgcggtaactaag
cctattactacaggtgcacctgctagcagccgtggccgcattaatgcatctgcgccaatg
gcagcacctgcatcggttgatgatactttcaatgacgtagcgcttaccgctaagtctgat
gatagccgcccagccattgtagtatcgggtagaagcgcagctattgcgaaagcaagtgcc
gctgcatcagcaccaacaacactcccagccagtgttgatgaaaacgcctaa
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