Alteromonas stellipolaris LMG 21861: AVL57_08120
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Entry
AVL57_08120 CDS
T04545
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asq03032
]
AVL57_08120
03400 DNA repair and recombination proteins [BR:
asq03400
]
AVL57_08120
Enzymes [BR:
asq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AVL57_08120
DNA replication proteins [BR:
asq03032
]
Prokaryotic type
DNA Topoisomerases
AVL57_08120
DNA repair and recombination proteins [BR:
asq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AVL57_08120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Gp-FAR-1
Toprim_2
Toprim_4
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AMJ73949
UniProt:
A0AAW7Z7N2
LinkDB
All DBs
Position
complement(1639164..1641830)
Genome browser
AA seq
888 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTKALGKVEPKKPAKELKTYSEE
DKQEYLRRHEYLKLVDRMGVDPEQNWKAHYQVLQGKEKVVNELKRLAKDADTIYLATDLD
REGEAIAWHLQELLGSKGKTYQRVVFNEITKNAIQEAFSDPGEVNVARVNAQQARRFLDR
VVGFMVSPLLWKKIARGLSAGRVQSVAVRLVVDREREIKAFVPEEFWDIHADLTSEQKAA
LRMLVAKHEGKAFKPVNKAQADKALEDLNGAKYLVESRESKPTSSRPSAPFITSTLQQAA
STRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQEALDNCRAYIEDNFGSKYLPESPN
RYGSKEGAQEAHEAIRPSSVKVNAAHLGDMERDAQRLYELIWRQFVACQMTPAKYDATTI
RVGANNYELTAKGRVLKFDGWTRVQPQLRKKGEEELMLPDVQKGDVLNLNALDPKQHFTK
PVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLENKRFYAEKMGEIVNDRLME
NFDDLMSFDFTANMEQQLDDIAEGNKDWKDVLNLFYSDFYGKLLNAEKAPEEGGMRLNQA
IPSGITCDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELE
TEALRAKKRCPICSTAMDSYLVDETRKLHVCGNTPTCEGTLVETGTFKIKGYDGPIIECD
KCGSDMELKNGRFGKYFGCTNEECKNTRKLLRNGEAAPPKEDPVDLPELPCEKSDAHFVL
RDGASGIFMAAHNFPKSRETRAPKVEELARFRDRISEKFYYLADAPQKDPEGNLAIVRYS
RKTKQQYVMSENEAGKATGWSAWYNDGKWETQAASKPAAKTKAKAKKK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatctctagtcatagtcgagtcgccagccaaagcgaaaacgataaataaatat
cttggtaaagattttatcgtaaaaagttctgtcggccatgttcgcgatctgcctacgaag
gcattgggtaaagttgagcccaaaaagccagcgaaagaactcaaaacttatagcgaagaa
gacaaacaagaatatcttcgcagacatgaatatttaaaacttgttgaccgcatgggtgta
gacccagaacaaaactggaaagcccactatcaggttttacagggtaaagaaaaagtggtt
aacgagcttaaacgcttggccaaagacgctgacactatctatctcgcaacggatttggat
agagaaggggaagctatcgcgtggcatttacaagaattgctgggcagtaaaggcaaaacc
tatcagcgtgtggtgtttaacgaaattactaaaaacgccattcaagaagccttctcagac
ccaggcgaagttaacgttgctcgtgtaaatgcacagcaagctagacgtttcctagaccgc
gttgttggctttatggtgtcgccattgctatggaaaaagatagcacgtggcttatctgca
ggccgtgttcaatcggttgctgttcgcctagtggtagatcgtgagcgcgagattaaagcg
tttgttccagaagagttttgggatattcacgccgacttaaccagcgagcaaaaagcggcg
ctacgtatgttggtagccaagcacgaaggtaaagcgttcaaaccggttaataaagcgcaa
gcagacaaagcattagaagatttaaatggcgctaagtacttagttgaaagccgtgaatct
aagcctacgtctagccgaccttcagctccgtttattacttcaacgctgcagcaagctgcg
agtactcgtttaggttttggtgttaagaaaaccatgatgatggcgcagcgcttgtatgaa
gcgggttacatcacttatatgcgtactgactcaacgaacttgagccaagaagcgcttgat
aattgccgcgcatatatcgaagacaattttgggagcaaatacctaccagaatcgccgaat
cgctatggcagtaaagaaggagcgcaagaggcgcacgaagccattcgtccttcaagtgtt
aaggtaaatgctgcgcatttaggcgatatggaacgggatgctcagcgtttatacgagctt
atttggcgccagtttgttgcgtgtcaaatgacaccagctaaatatgatgctaccaccatt
agagtaggtgcaaacaattacgagttaacagccaaaggccgtgtgttaaagtttgatggc
tggacacgtgttcaaccacagcttcgcaaaaaaggcgaagaagagttgatgctgcctgat
gttcaaaaaggcgatgtattaaacttaaatgcacttgatcctaagcagcacttcactaaa
ccagtggcgcgttttaacgaagcgtctttggtaaaagagctggaaaaacgaggcatcggc
cgaccttcaacttacgcaagtattatttcgaccattcaagatcgcggttatgttcgcctt
gaaaataagcgtttttatgctgaaaaaatgggtgaaatcgttaacgatcgtttgatggaa
aactttgacgacctaatgagtttcgactttaccgccaacatggagcaacagcttgatgat
atagcggaaggtaacaaagattggaaagacgtactcaatctgttctacagcgatttttac
ggcaagttgctgaatgccgaaaaagcccctgaagaaggcggaatgcgccttaatcaagcc
attccgtcgggtattacatgtgacaagtgcggacgtgaaatgaacgtgcgtacggcgtct
accggcgtattccttgggtgttctggttacaatttaccgccaaaagaacgttgcactaac
accatgaacctgaccccaggtgatgaagtggtgaaggtagatgacgaggaagaattagaa
accgaggcgttgcgtgctaagaagcgttgtccaatatgcagtactgccatggacagctac
ttagtggacgaaacccgtaagctgcatgtgtgtggtaatacacccacctgtgaaggtacc
ttagttgaaaccggtacgttcaagattaaaggttacgacggccccattatcgaatgtgat
aagtgtggcagtgacatggaactgaaaaacgggcgctttggtaaatacttcggctgtact
aacgaagaatgtaaaaacacgcgtaagttattacgtaacggcgaggctgcaccacctaaa
gaagatccggtagatttaccagagctgccttgtgaaaagtccgatgcgcattttgtacta
cgcgatggcgcttcaggtattttcatggccgcacataacttccctaaatctcgggaaact
cgtgcaccaaaagtggaagaactagcgcgctttagagatagaatatctgaaaaattctat
tacctagccgatgcaccgcaaaaagatccggaaggtaaccttgccattgttcgctatagt
cgtaagaccaagcagcagtatgtgatgtcggaaaatgaagcgggtaaagccacaggttgg
tcagcatggtataacgacggtaagtgggaaacacaagccgccagtaaacctgcagctaaa
accaaagcgaaagccaagaagaaataa
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