Alteromonas stellipolaris LMG 21861: AVL57_12620
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Entry
AVL57_12620 CDS
T04545
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AVL57_12620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asq03400
]
AVL57_12620
Enzymes [BR:
asq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AVL57_12620
DNA repair and recombination proteins [BR:
asq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AVL57_12620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
AAA_22
UvrD-helicase
SLFN-g3_helicase
SH3_13
PhoH
UvrD_C
ResIII
AAA_12
TrwB_AAD_bind
DEAD
RecD_N
Flavi_DEAD
AAA_16
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AMJ76426
LinkDB
All DBs
Position
complement(2674152..2676209)
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AA seq
685 aa
AA seq
DB search
MNSDEYLEQLFGIEAIDRFVALEFAHCERLTDAEQVIWLHLLVALSFMQRSGHSCLLLTE
IAGSRLFVEPQSDAESEPDLDPSTVIESQAEPAPTESSTETSSRKLGYAFPGLTEMISVI
KNALGSEKDDKSNKLFPLFVYQSGKLYSRRYYNFEQEIAASIANRTHVTALSEDGLSRVK
ALWPTMFPTNTTDEQDWQQVAVAKSLVQQFSVINGGPGTGKTYTVLRLLLALQACNQNER
IVLAAPTGKAQQRMTESIVSNLETLRGKVDDNLLNSVPTDAVTLHRLLGLREHTIATRYN
QQSPLMLDVLIVDEASMVDLALMARIIRALPPHARLYFIGDADQLPAVELGNVLEQLVHD
SDEEEFVASGIHTNSHSLGAVTSELRQHIASLCPHLPLLPVNENAKTWVHTLQAPQRFKG
QVAEVATAIQAGKSKQALDAMHSEALTDKMPAVKSRDTGEKSHWLQDGVFIQPESRFTTS
VLRKLAQESYEPVFKAQSAKEALSLLNRVRWLTPVRKGDMGVEGLNALVFDAIKHNIKRR
EGFFYQGQPIMIVKNNHPQRLSNGEVGIIWPDLSGKLLAWFETQDGDLRSISLSRVPAFE
TVFAMTIHKSQGSEFKYVVLILPRPENEKAAGLFHRGLVYTGLTRAKDGCLVIANTTTFS
AMVERRDKRFSGLSEAIKMCVLEDE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
ataaatagtgacgagtatttagaacaacttttcggtattgaagcaattgatcgttttgta
gctctggagtttgcccattgcgaaagacttaccgacgctgagcaggtcatctggttacat
ttgctggtggcattgtcttttatgcagcgcagcggccacagttgcttgttactgactgaa
atcgcaggaagtcggttgtttgttgagccccaaagcgacgcagaaagcgagcccgatctt
gatcccagcactgttattgagtcacaagcagaacctgctcctacagaatcaagtacagag
acatcatctcgcaagttaggctacgcatttccaggtcttaccgaaatgatcagtgtgatt
aaaaacgcactaggcagtgaaaaggatgacaagagtaacaagttatttccgctatttgtc
tatcaatcaggcaagttgtacagccgccgctactataattttgagcaagaaattgccgcc
agtattgctaatcgaacgcatgtgacagcgctaagcgaagacgggctatcacgggttaaa
gcgctatggccaaccatgtttccaactaacaccaccgatgagcaagactggcaacaagtc
gcggtggcgaaaagtttagtgcaacaatttagcgtaattaacggtggcccaggcacaggg
aaaacctacaccgtactcaggctgctattagcgcttcaggcgtgtaaccagaacgagcgg
atcgtattagcagccccaacgggtaaagcgcagcagcgcatgaccgaatctatcgtgagt
aatttggaaaccttaaggggtaaagttgatgacaacctgttaaacagcgtacctaccgat
gcggttacgcttcataggttgttaggactacgggaacacaccatcgccacgcgttacaat
cagcaaagcccgctcatgcttgatgtgcttattgtggatgaagcgtccatggtcgacttg
gcgctaatggctagaattattcgcgctttaccgcctcatgcacgtttgtatttcattggt
gatgccgatcagctgcctgcggtagagctaggtaacgtgcttgaacaacttgtacacgat
agcgacgaagaagagtttgtcgcatcgggtatacataccaatagccatagcctaggcgca
gtcactagcgagctacgccagcatattgcttccctgtgcccacatctgcccttgctgcct
gtgaacgagaatgctaaaacctgggtgcataccctgcaagcgcctcagcgatttaaaggg
caggtggctgaagttgctaccgctattcaggcaggaaaaagcaagcaggcgcttgatgct
atgcattcagaggctcttacagacaaaatgccggcggttaaatctagagatacaggcgag
aaaagccactggctacaagacggtgtatttattcaacctgaaagccggtttacaactagc
gtgttgagaaagttagcacaagaaagctatgaacctgtgtttaaagcgcagagcgccaaa
gaagcgttgagtctgctcaatcgcgtgcgatggttgactccagttcgaaagggcgacatg
ggtgtggaagggttgaatgcgttggtgtttgacgcgataaaacacaatatcaaacgccgc
gaaggttttttctaccaaggccaacccattatgattgtgaaaaacaatcatccacaacgc
ttatcgaacggtgaggtgggtattatctggcctgatctcagcggcaagctattggcttgg
tttgaaacgcaagacggcgacctacgttcaatttcgttatctcgggttcctgcgtttgag
acagtatttgcaatgacaatacataaatcgcagggttcagagtttaaatacgtggtgtta
atactgcctaggcctgaaaacgaaaaagctgctggattgtttcatcgagggttggtctac
accggcctaacgcgggctaaagatgggtgtttggttattgcgaacaccacaacatttagc
gctatggtagagcggcgagataagcgtttttcaggtttgtcagaggcaattaaaatgtgt
gtgttagaagatgaataa
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