Alteromonas stellipolaris LMG 21861: AVL57_12650
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Entry
AVL57_12650 CDS
T04545
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL57_12650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asq03019
]
AVL57_12650
Messenger RNA biogenesis [BR:
asq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVL57_12650
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AMJ76427
UniProt:
A0ABN4LT93
LinkDB
All DBs
Position
complement(2691524..2692825)
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AA seq
433 aa
AA seq
DB search
MNLYGHDGKWLMVDCGVSFDEPLIPPYRYTGTKKQTHHRVVAPDPAFIAAQKENIAGIVI
THAHEDHVGALPYLWARFQCPIYTTSFTAEVLRRKLAQTKLANKVPIVEIASEQTLTLGP
FDVSWLSVTHSLPEPYALKIATSAGTVLHTADWKIDAQPITGKPFDSNTYRALGNENILA
MVGDSTNATKPGFSISERNCYDGLLSTVKPLQGRVVVTCFGSNIARLITLARVAQKTGRY
VALYGRSLINMYSIARQQGIWPVDLPVADAFHLGYLPPNEVLGVATGSQGEKNTALSRMA
NDSHPHLQLDKGDTVIYSAIAIPGNEDSIKRVNNVLSARGVKVIMSEESQLPIHASGHPC
AEELKLMYHWVKPQIAIPVHGEEVHLKAHAMIAKECGVKKHYVGQNGDLYRLAPQPSIRR
QVINTGRVPVQQD
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ctgaacctgtatgggcatgacggcaaatggttaatggtagattgtggagtgtcgttcgat
gaaccgcttattcctccttatcgctatactggtacaaaaaagcaaacccatcacagggta
gttgcgccagatcccgctttcattgcggcgcaaaaagagaatattgccggcattgttatc
actcatgcgcatgaagatcatgtaggcgcattaccgtatttatgggcacgttttcagtgc
cccatctataccacttcttttactgccgaagtattacgccgtaaacttgcgcaaaccaaa
ttagccaacaaagtacctatagtagagatagcctctgagcaaacgctgacattagggccc
tttgatgtaagctggttatcagtaacccattcgctgcccgaaccttatgcgttaaaaata
gccacgtcagcgggcacggttttacatactgccgactggaaaattgacgcgcagccaatt
accggtaagccttttgacagtaatacctatcgcgcattggggaacgaaaacattcttgcc
atggttggagattcaaccaacgcgacaaaaccaggtttctccatctctgaacgcaattgc
tacgacggtttgttgagcacagttaaaccactgcagggcagagtcgtcgttacctgtttt
ggtagtaatatcgcgcgattaattaccctagctagggtggcccaaaaaaccgggcgttac
gttgctctatacgggcgctctcttatcaatatgtacagcattgcccgccaacaaggaatc
tggcctgtagacttgccagtggcagatgcgtttcatttaggctacttgccaccaaatgaa
gtgctcggtgtggcaacaggcagtcagggggagaaaaataccgccctttctagaatggcc
aacgacagtcaccctcatttacaattagacaaaggcgataccgttatttattccgctatt
gcaataccgggtaacgaagacagcattaagcgagtaaataatgtgcttagtgctagaggc
gtaaaagtaatcatgagtgaagagagtcagctgcctattcatgcaagtggtcacccatgc
gccgaagaactcaaactcatgtaccattgggtgaagccacaaattgctattcctgtgcat
ggcgaagaggtgcaccttaaagctcatgcgatgattgccaaagaatgtggtgtaaaaaaa
cactacgtggggcaaaacggtgacttgtatcggttagctcctcaaccaagcattcgacgg
caagttattaatactgggcgagttcctgttcagcaagattaa
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