Alteromonas stellipolaris LMG 21861: AVL57_15950
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Entry
AVL57_15950 CDS
T04545
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVL57_15950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asq03019
]
AVL57_15950
Enzymes [BR:
asq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AVL57_15950
Messenger RNA biogenesis [BR:
asq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVL57_15950
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HEM4
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AMJ75327
UniProt:
A0ABN4LS33
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All DBs
Position
3434035..3435279
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AA seq
414 aa
AA seq
DB search
MSFSDLGLCTELLNTVAEKGYTSASPIQQEAIPAILSKQDLIAIAQTGTGKTASFSLPIL
QLLVDKPRLETKGIRALIIAPTRELAAQVAQNVEQYSQNLNIRSTAVFGGVRIEPQKYAL
AQGVDILIATPGRLLDLYEQGDINFDHLEILVLDEADRMLDLGFIDHIHHIQKLLPKQRQ
TLLFSATFSKEIKTLATTMLNTPVTIELARANDHIEKITQILHPVDKERKNELLIHLLEN
NDWSQILVFTRTKRGADSLRNELEAKGIAAESIHANRTQQARTLALNGFRDGSLKVLIGT
DLAARGIDIQQLPCVINVDLPYVAEDYIHRIGRTGRASSEGLAISLFSDDEAKQLRSIER
LLGRQFKKTFISGFAPKPKPKPPAAKVEEDLYGNFEADDKPKGKGRSKGRRKRR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttagcgatttaggcttatgtactgaacttttaaacaccgttgctgaaaagggc
tatacctcagcctccccaattcagcaggaagccattccagcaatattgagtaagcaagac
cttatcgcgattgcacaaacaggaacggggaaaaccgcgagtttttcattacccattttg
cagctattggtagacaagccgcgcctagaaaccaagggtataagggcgcttattattgcc
cctactcgcgagcttgccgcgcaggttgctcaaaacgttgaacaatatagccaaaatcta
aacattcgctcaacggctgtatttggtggcgtgcgaattgagcctcaaaaatatgcgtta
gcgcaaggtgtcgatattcttattgcaacaccagggcgcttgctagatttatatgaacaa
ggtgatattaacttcgaccatcttgaaatattggtgctagatgaagccgaccgcatgttg
gacttaggctttattgaccatattcatcacatacaaaagctactgcctaagcaacgtcaa
acgctactcttttcagccacgttttcaaaagaaattaaaacactcgccaccacgatgcta
aatacccctgtgactattgagttagccagggccaatgatcacatcgaaaagatcacgcaa
atattgcatccggtagacaaggagcgaaaaaacgagcttcttattcatcttcttgaaaat
aatgactggtctcaaatattggtatttacgcgcaccaaacgcggtgcggatagcttaagg
aacgagcttgaagcgaaaggcattgcggcagagtctattcatgcaaatagaacgcagcaa
gcgcgcacattggcgttaaatggttttagagatggcagccttaaggttctgattggaaca
gaccttgccgctagaggtatcgatattcagcaattgccctgtgttattaatgtcgacctg
ccctatgtagctgaagactatattcatagaattggtcgtacaggcagagcgtcgtcagag
ggcttggctatttcgctattcagcgacgacgaagccaaacagttaaggtcaatagaacgc
cttcttggcagacagtttaaaaagacctttatttccggttttgcgccaaaaccaaaaccg
aagccacctgcagctaaggtagaggaagacttatacgggaattttgaagctgacgataag
cctaagggtaaaggcagatcgaaaggacggagaaagcgccgctag
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