Aeromonas schubertii: WL1483_2006
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Entry
WL1483_2006 CDS
T04186
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asr
Aeromonas schubertii
Pathway
asr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WL1483_2006 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asr03400
]
WL1483_2006 (mfd)
Enzymes [BR:
asr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WL1483_2006 (mfd)
DNA repair and recombination proteins [BR:
asr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WL1483_2006 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALP41425
UniProt:
A0A0S2SI97
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All DBs
Position
2925385..2928804
Genome browser
AA seq
1139 aa
AA seq
DB search
MPRKAGLKLTIGNLTGCALALTIGELAHQHDRPLLLVTADTPSALRLEQELAFLLEGSDC
PVLLFPDWETLPYDTFSPHQDILSQRLETLYRLPTMARGIIIVPVTTLMLRCPPRSYLDR
FSLQLKQGQRLSLQGLRSRLAEAGYVAVEQVLEHGEFAARGSLLDLFPMGSQSPYRIDFF
DDEVDSIRPFDPETQRSREPIERVNLLPAREFPTDEAAIERFRGHYREHFEISRADGAIY
QEVSKGRWPAGIEYYMPLFFDETAHLFDYLPADSLLITVGDTYAAAGRFWGDIQQRYEER
RWDQSRPLLPPMALYLPVEQLFASLGQYGWVALQEGSDTPHDLGLTRLPELTLDHSQEHP
LAALQHFLQGFAGRVLFTVPSEGRREALKDLLARIDLRPATVPTLDHFFAGSDPLAILVC
PLEGGLILPGGELAIITESELLGGRVRSQRKRERAKQLSSDAVIRNLGELTQGQSVVHLD
HGIGRYLGLETLTAGGLPTEFLTLEYAGGDKLFVPVTSLHLISRYTGSDNPPCHKLGGET
WARAKRKAAEKVRDVAAELLDIYAHRAARSGFAFRHDKDAYRQFAAGFPFEETEDQLNAI
NAVLGDMCQGKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLVPTTLLAQQHYDNF
RDRFANWPVRVEVLSRFRSAREQSAVLADLKEGKVDIIIGTHKLLGSDLTFKDLGLLIVD
EEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAIKTF
VRQHDPAVVREAVLRELKRGGQVYYLHNDVESIDKCAGDLAELIPEARISVAHGQMRERE
LERIMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQ
AYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALATHDLEIRGAGELLGDDQSGQIES
VGFTLYMEMLEQAVEALKSGKEPSLDTLLSDHTEVELRLPALLPDDYLPDVNMRLSTYKR
IASCTSQEELDELKVELIDRFGLLPEATKTLLEIAALRLGATRLGIKRLEMSERGGYLDF
SEKTTVDPTFLVRLLTEQPRIYKMEGPSRLRFNVVTGDRESRLRVVGDLLAELSRHKMA
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
ttgccccgcaaggccggtctcaaactgaccataggcaacctcaccggttgtgcccttgcc
ctgaccatcggtgagctggcccaccagcatgaccgccccctgctgctggtcaccgccgat
accccgagcgccctgcgtctcgaacaggaacttgccttcctgctcgaggggagcgactgt
cccgtgctgctcttcccggactgggaaacgctgccctacgacaccttctcgccccaccag
gacatcctctcccagcgtctcgagaccctctatcgtctcccgaccatggcacggggcatc
atcatagtcccggttaccaccctgatgctgcgctgccctcctcgcagctatctggaccgc
ttcagcctgcagctcaaacaggggcagcgcctctccctgcaggggctgcgttcacgcctt
gccgaggcgggttacgtggcggtagagcaggtgctcgagcacggggagtttgccgcccgc
ggctccctgctcgatctcttccccatggggagccagagcccctatcgcatcgacttcttc
gacgacgaagtggactccatccgccccttcgaccccgagacccagcgctcacgggagccc
atcgagcgggtcaatctgctgccggcccgggagtttcccaccgacgaggcggccatcgag
cgttttcgtggccactatcgggagcatttcgagatctcccgcgccgacggggccatctat
caggaggtgagcaagggtcgctggccggccggtatcgagtactatatgccgctctttttc
gacgagacggcgcacctgtttgattatctccccgccgacagtctgctcatcacggtcggt
gatacctatgccgccgccgggcgcttctggggagacattcagcagcgttacgaagagcgc
cgttgggatcagagccgacccctgctcccccccatggccctctatctgccggttgagcag
ctctttgccagcctgggccagtatggctgggtggcgctgcaggaggggagcgataccccc
cacgatctgggactgacccgcctgcccgaactcaccctggatcacagccaggagcacccc
ctggccgccctgcagcactttttgcaaggctttgccggtcgcgtcctgtttacggtgccc
agtgaaggacggcgcgaggcgttaaaggatctgttggcccgtatcgatctcagacccgcc
accgtgcccacgctggatcacttctttgccggtagcgatcccctcgccatcctggtctgc
cccctcgaggggggtctgatcctgccggggggagagcttgccatcatcaccgagagcgag
ctgctcggtggtcgggtgcgcagccagcgcaagcgagagcgcgccaagcaactgagctcg
gatgcggtgatccgtaacctcggcgagctgacccagggtcagagcgtggtgcatctggat
cacggtatcggtcgttatctgggactcgagaccctcaccgccggcggcctgcccaccgaa
ttcctgaccctggagtatgccggtggcgacaaactcttcgtgccggtcaccagcctccat
ctcatcagccgctacacgggctcggacaatcccccctgtcacaagctcggcggtgagacc
tgggctcgcgccaaacgcaaggccgccgaaaaggtgcgcgatgtggcggccgagctgctc
gacatctacgcccaccgggcggcacgcagcggctttgccttccgccacgacaaggatgcc
taccgccagtttgcggccggcttcccgtttgaggagaccgaggatcagctcaatgccatc
aacgccgtgctcggcgacatgtgccagggcaagagcatggaccgtctggtgtgtggcgac
gtgggttttggcaagacagaggtggccatgcgcgcggcctttgtggccgtgcacgggggc
aagcaggtggcggtgctggtgcccaccaccttgctcgcccagcagcactatgacaacttc
cgcgaccgcttcgccaactggccggtgcgggtcgaggtattgagccgctttcgctccgcc
agggagcagagcgccgtgctggccgatctcaaagagggcaaggtcgacatcatcatcggc
acccacaagctcttgggatccgatctcaccttcaaggatctgggcctgctcatcgtcgat
gaggagcacaggttcggggtgcgccagaaggagaagatcaaggccctgcgggccgatgtg
gatatcttgaccctgaccgccaccccgatcccgcgcaccctcaacatggccatgtcgggg
atgcgcgatctctccatcatcgccacaccacccgccaagcgactggccatcaagaccttc
gtgcgccagcacgacccggccgtggtgcgcgaggcggtgctgcgggaattgaagcgcggc
ggacaggtctactacctgcacaacgacgtggagagcatcgacaagtgcgccggcgatctg
gccgagctgatccccgaggcccgtatctcggtggcccacggccagatgcgcgagcgtgag
ctcgagcggatcatgtcggatttctaccaccagcgtttcaacctgctggtgtgcaccacc
atcatagagaccggcatcgacgtgccgagcgccaacaccatcatcatggaccgggccgat
catctggggttggcccagttgcaccagctgcgcggtcgggtcgggcgctcccaccaccag
gcctatgcctatctgctcacccctcatcccaagctgatgaccaaggatgccgccaagcgg
ctcgaggccatcgcgtcgctcgaagatctcggagccggcttcgccctggccacccacgat
ctggagatccggggcgccggtgagctcttgggcgacgatcagagcggccagatcgaatcg
gtgggcttcaccctctacatggagatgctggagcaggcggtggaggcgctcaagagtggc
aaggagccctccctcgacaccctgctctcggatcacaccgaggtggagctgcgcctgccg
gccctgttgcccgacgactacctgccggacgttaacatgcgtctgtccacctacaagcgg
atcgccagctgtacctcgcaagaggagctcgatgagctgaaagtcgagctgatcgatcgc
ttcggcctgctgcccgaggcgaccaagaccctgctcgagatcgcggccctgcgccttggg
gcaacccgcctcgggatcaagcgcctggagatgagcgagcgcggcggctatctggacttt
tccgagaagaccacggtcgaccccaccttcctggtgcgcctgctcaccgagcaaccacgc
atctacaagatggaggggccgagccgactgcgctttaacgtggtgaccggcgatcgcgag
agccgcctgagggtggtcggcgatctgctcgccgaactctcacgccacaagatggcgtga
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