Aeromonas schubertii: WL1483_3140
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Entry
WL1483_3140 CDS
T04186
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asr
Aeromonas schubertii
Pathway
asr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WL1483_3140 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asr03019
]
WL1483_3140 (deaD)
03009 Ribosome biogenesis [BR:
asr03009
]
WL1483_3140 (deaD)
Enzymes [BR:
asr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WL1483_3140 (deaD)
Messenger RNA biogenesis [BR:
asr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WL1483_3140 (deaD)
Ribosome biogenesis [BR:
asr03009
]
Prokaryotic type
rRNA helicases
WL1483_3140 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_19
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALP42559
UniProt:
A0A0S2SLE8
LinkDB
All DBs
Position
complement(2611478..2613379)
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AA seq
633 aa
AA seq
DB search
MSDTEQLPLFDELGLAAPILKALHDVGYERPSPIQAASIPPLLAGHDLLGQAQTGTGKTA
AFALPLLSRLEAGNRSTQILVLAPTRELAIQVSEACQRYAHHMPDFHVLPIYGGSSYDTQ
IRALRRGAQVVVGTPGRVMDLIRRKSLDLSGLKALVLDEADEMLRMGFIDDVDWIMDQCP
AGRQVALFSATMPEQIRRVAQKHLKNPKEIKIASKTATATTIRQRYWQVTGSHKLEAMTR
LLEVEPYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVEKLRQGQLDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR
SIEHATRQSIEPMKMPTTADINQHRLTKFKERIRETMMGEELETYYELVNELVQDESVDP
IELAAALAKLVQGDQPLLLDESKPDPLLSQPPREFDRQRDFGDRDFNNRGERDFNRGDRP
ARRMPGLEPRPLKDNPDVKMERFRVDVGSHHGVKPGQIVGAIANEANLESRFIGNIEIAD
DFSTVDLPKGMSAEVMEVLRRARVCQRPLMITPYTEVPEGTRSASPRQFRDRPFNKERRP
FKERREGNGNREHGNREGGFDKRKFGNKRREHN
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccgaacaactgcccctgtttgacgagctgggattggccgcgcccattttg
aaggcgctgcatgacgttggctacgagcgcccgtcaccgatccaggccgcctccattccg
ccgctcctggcgggtcatgatctgctggggcaggctcaaaccggtacagggaagaccgct
gctttcgcgcttccgcttttgtctcgcctggaggcgggcaatcgctctacccagattctg
gttctggctccgacccgtgagctggccatccaggtctccgaggcgtgccagcgttacgcc
caccacatgcccgatttccatgtgttgcccatctatggcggctcttcctacgacacccag
atccgcgccctgcgtcgcggtgcccaggtggtcgtcggtaccccgggtcgcgtcatggac
ctgatccgtcgtaagagcctggatctctccggtctgaaggccctggtgctggacgaagcg
gacgagatgctacgcatgggctttatcgacgacgtggactggatcatggaccagtgcccg
gccggtcgtcaggttgccctcttctctgccaccatgccggagcagatccgccgcgtggcc
cagaagcacctgaagaaccccaaagagatcaagatcgcctccaagactgcgaccgcgacc
accatccgtcagcgttactggcaggtgaccggctcccacaagctggaagccatgacccgt
ctgctggaagtcgagccttacgaggccctgctggtgttcgtgcgtaccaagaacgccgcc
gaagagctggccggcaagctggccgctcgtggccatgcctgtgaagccctgcacggcgac
atcccgcagaagctgcgtgagcgtaccgttgagaagctgcgtcagggtcaactggatatc
ctgatcgccaccgacgtggtcgcccgcggtctcgacgtcgagcgcatcacccacgtggtg
aactacgacattccctacgataccgagtcctacgtgcaccgtatcggccgtaccggtcgt
gccggtcgtaagggtgaggccatcctgtttgtggctccgcgcgagcgtcgcatgctgcgt
tctatcgagcacgcgacccgtcagagcatcgagccgatgaagatgccgaccaccgccgac
atcaaccagcaccgcctgaccaagttcaaggagcgcattcgcgagaccatgatgggtgag
gagctcgagacctactacgaactggtcaacgagctggtgcaggatgagtctgtcgacccc
atcgagctggctgccgccctggccaagctggtgcaaggggatcagcccctgctgctcgac
gaatccaagccggatccgctgctctcccagccgccccgcgagttcgaccgtcagcgcgac
ttcggtgaccgtgacttcaacaaccgcggcgagcgcgactttaaccgtggcgatcgcccg
gcccgtcgcatgccgggtctggagccgcgtccgctcaaagacaatcctgacgtgaagatg
gagcgtttccgcgttgacgtgggttcccatcacggcgtcaagccgggtcagatcgtcggc
gccattgccaacgaggccaacctcgagagccgcttcatcggcaacatcgagatcgccgat
gacttctccaccgtcgacttgcccaagggcatgagcgccgaggtgatggaagtgctgcgt
cgcgcccgtgtctgccagcgcccgctgatgatcactccctacaccgaagtaccggaaggg
acccgcagcgcttccccgcgccagttccgtgaccgccccttcaacaaggagcgccgtccg
ttcaaggagcgtcgcgaaggcaatggtaaccgcgagcacggcaaccgcgaaggtggcttt
gacaagcgcaagtttggtaacaagcgccgcgagcacaactga
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