Aeromonas schubertii: WL1483_927
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Entry
WL1483_927 CDS
T04186
Symbol
rne
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asr
Aeromonas schubertii
Pathway
asr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WL1483_927 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asr03019
]
WL1483_927 (rne)
03009 Ribosome biogenesis [BR:
asr03009
]
WL1483_927 (rne)
Enzymes [BR:
asr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WL1483_927 (rne)
Messenger RNA biogenesis [BR:
asr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WL1483_927 (rne)
Ribosome biogenesis [BR:
asr03009
]
Prokaryotic type
rRNA processing factors
WL1483_927 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ALP40346
UniProt:
A0A0S2SF97
LinkDB
All DBs
Position
complement(2152568..2155432)
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AA seq
954 aa
AA seq
DB search
MLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEIARTYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTELKEAMNGLTVPDGMGLIVRTAGVGKSQEELEWD
LNVLLNHWESIRKASENVAAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPTVFERAKAH
IELVRPDFINRVKQYKGEVPLFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLR
EAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLALSIL
RLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRAAIASLEQRNDVRVYIIPNQHLETPHYE
VTRIRKNEIPEAASYELKTEVVKPTYQPRQVQVVERDQPLLQGFSQPSKPAPVAPVAAAP
AKVDAEQTKPGFLSRLFGSLFGTAKAQAETAVPAAEPEQKAHQKGDTRRRQPREERQSRG
ERGNEQRRDRRRDERPARPSDEQKSETNREERNKRPRQEREPREERQPRQPREPRAERAP
RQEREPRAERAPRQEREPRAEKPVQQTTQGVSEEQSVRVEKEQRVAERRERRQMRKQVRV
EVSESATVTEPVAQAVEAVIAAPVVEQAPVIATETVREFQPELEPVLGTQAHVQADVPAP
VVTEEENDARPRRQREPRAPREGQQRRKRINEDVRRQREEEPVAQSSEPVSNVEVVVAAE
PVVEPVTATAEVANAVTVEVLPVEVVATVPAEPAIEPKVQAQVKSRPANQGATGVLARAR
RATAPMTKPEPAPALPTREAVDYPPLERAEVARSGRHGGRSAADHQATSPAGRP
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgctaatcaacgcgactcaggaagaagagttgcgcgtagcgctggttgacggacaacag
ctctacgacctcgatattgagagtccgggacacgagcagaagaaagccaacatctacaag
ggcaaaatcacccgcgtagagcccagcctcgaagctgcttttgtcgactacggcgccgag
cgccacggtttcctgcctctcaaggagatcgcccgcacttacttcccctccggttattcc
taccaaggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtgatcgtccag
atcgacaaggaagagcgtggcaccaagggtgcagccctcaccacctttatcagtctggct
ggcagctacctggtgctgatgccgaacaacccgcgtgccggtggtatttcccgccgcatc
gagggtgacgagcggaccgaactcaaggaagccatgaacgggctgaccgtgccggacggc
atgggcctcatcgtgcgcaccgccggtgtgggcaagtcccaggaagagctggagtgggat
cttaacgtcctgctgaaccactgggaatcgatccgcaaggcctccgaaaacgtggccgca
cctgtgctcatccaccaggagagcaacgtcatcgtgcgtgccattcgcgactacctgcgt
cgcgatgtgggcgagatcctgatcgacaacccgaccgtattcgagcgtgccaaagcccac
atcgagctggtgcgtcccgactttatcaatcgggtcaagcagtacaagggtgaagtcccc
ctgttcaaccacttccagatcgagagccagattgagtcggccttccaacgtgaagtgcgc
ctcccctctggcggcagtatcgtcatcgatccgaccgaggcgctgacctctatcgacatc
aactcggcgcgcgccaccaagggtggtgacatcgaggagacggccctgcagaccaacctg
gaagcagccgacgagatagcccgccagctgcgcctgcgtgacctgggtggcctgattgtc
atcgactttatcgacatgaccccggtgcgtcaccagcgcgaggtggaaaatcgcctgcgc
gaggccgtgcaccaggaccgcgcccgcatccagctgggccgcatctcccgcttcggcctg
ctcgagatgtcccgtcagcgtctgcgcccctccctcaacgagtccagcagccatatctgc
ccccgttgccagggtcagggcgtgatccgcgacaacgagtcactggcactctccatcctg
cgtctcatcgaagaagaggcgatgaaggacaacacagagcaggtgcatggccaggtgccg
gtcgatgttgccgcctatctcctcaacgagaagcgcgcagccatcgccagcctcgagcag
cgtaacgatgtgcgtgtctatatcatcccgaaccagcatctggagaccccgcactacgag
gtgacccggatccgcaagaacgagatcccggaagcggccagttatgagctcaagaccgag
gtagtcaagccgacctaccaaccccgtcaggtacaggttgtcgaacgcgatcaaccgctg
ttgcaaggctttagccagccgtccaagccggcccctgtagctcctgttgcggctgccccg
gccaaggtggacgccgagcagaccaagcccggtttcctgagtcgtctgtttggctctctg
tttggcaccgcaaaggcgcaagccgaaactgccgtcccggctgccgagccggagcagaag
gcccatcagaagggggatacccgtcgtcgtcagccacgcgaagagcgtcagtcccgcggt
gagcgcggcaacgagcaacgccgtgaccgtcgtcgtgacgagcgccctgcccgcccaagc
gatgagcaaaagagcgaaactaaccgcgaagagcgcaacaagcgcccccgtcaagagcgt
gaacctcgtgaggagcgccaaccgcgccagccccgtgagccccgcgctgagcgtgcaccg
cgtcaggagcgtgagccccgtgccgagcgcgccccccgtcaggagcgtgaaccccgcgca
gaaaagccggtgcaacaaacgacccagggcgtgagcgaagagcagagcgtacgggttgaa
aaagagcagcgcgttgccgagcgccgcgagcgtcgacagatgcgcaagcaggttcgtgtc
gaggtcagcgagtccgcaaccgtcaccgagccggtagctcaggcggtagaggctgtaatc
gcggctcccgtggtagagcaggctccggtcatcgcaaccgaaaccgtacgggagttccag
cccgagcttgagccggtactgggtacccaggctcatgtacaggctgacgtaccggcacct
gtcgtgaccgaggaagagaacgatgctcgtccccgccgccagcgtgaaccgcgtgccccc
cgtgaaggacagcagcgccgcaagcgtatcaacgaagatgtccgccgccagcgtgaagag
gagccggttgctcagagctcagagccggtatctaacgttgaggtggtcgtggctgccgag
cctgtcgttgagcctgtcaccgctacagccgaagtggccaatgctgtcaccgtcgaggtg
ctgccggttgaggtcgtggccaccgtgccagcagagccggccatcgaacccaaggttcaa
gcccaggtcaaatccagaccggccaaccagggtgcgactggagtcctggccagagcccgc
cgcgctaccgcgcccatgaccaagcccgagccggcaccggccctgccaacacgcgaagct
gttgactacccgccgctcgagcgcgccgaagtggctcgctctggtcgccacggtggccgc
agcgccgccgaccaccaggcaaccagcccggccggccgtccctaa
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