Aeromonas schubertii: WL1483_933
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Entry
WL1483_933 CDS
T04186
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asr
Aeromonas schubertii
Pathway
asr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WL1483_933 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asr03019
]
WL1483_933 (rnr)
03016 Transfer RNA biogenesis [BR:
asr03016
]
WL1483_933 (rnr)
Enzymes [BR:
asr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WL1483_933 (rnr)
Messenger RNA biogenesis [BR:
asr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WL1483_933 (rnr)
Transfer RNA biogenesis [BR:
asr03016
]
Prokaryotic type
tRNA degradation factors
WL1483_933 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ALP40352
UniProt:
A0A0S2SF83
LinkDB
All DBs
Position
complement(3559015..3561393)
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AA seq
792 aa
AA seq
DB search
MSYNDPFLEREAEKYENPIASRELLLKIIEDHVRPISREEIERELKLKDEEHLEALRRRL
RAMERDGQLVFTRNQCYALPDRLNLVKGYVLGHKDGFGFLRPDGGGQDLYLNNREMQRLM
HGDYALVQPTEIDRKGRQEARLVRVLKAREMDIVGRYFVENGVGFVVPDDSRIGQDILIP
ERENKGARQSQVVVVRLTQRPTGRLNALGTVLEVLGENMAPGMEIEIALRNHGIPHTWPE
AVTQEIVNLTDEVPEKAKLGRVDLRTLPLVTIDGEDARDFDDAVFCEKKKSGGWRLWVAI
ADVSAYVKPGTALDAEAYQRGNSVYFPEFVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTI
SASGRMSGYTFYEAVMNSHARMTYTKVAAILDGDPKLRQQYEPLVGHLEELSHLYKALKH
ARHLRGAVEFESEETRFIFNAERKIDRIVPLVRNDAHKIIEECMIQANVAAARFIEKHEA
AALFRVHDRPGEERLTGFRQFLAELGLELKGGLEPEPRDFAELADKFEGRPDAELLSTML
LRSMRQAIYQADNIGHFGLALKSYAHFTSPIRRYPDLILHRAIKYQLAKAQGNPRHKWTP
SGGYHYSQDEMDPMGEHCSLTERRADDATRDVADWLKCEYMQDHVGDEFDGVIASVTGFG
FFVRLAEIHIDGLVHVSTLTNDYYQFDPIHQQLIGENFRRRYRLGDKVRVKVMGVSLDDR
KIDFVMVEEPLKMTGKGAKQAVRKMADIKKEKAKTERRRDKRKAEGKEKKSGGSAKPSNR
RPGKRARDKAKG
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcttataacgatcccttcctcgaacgcgaggccgagaaatacgagaatcccatcgcc
agccgcgaactgctgctgaagatcatcgaggaccacgtgcgtcccatctctcgcgaggag
atcgagcgcgagctcaagctcaaagacgaggagcatctggaggccctgcgccggcgcctg
cgtgccatggagcgtgacggccagctggtcttcacccgtaaccagtgctatgccctgccc
gatcgcctcaatctggtgaaggggtacgtgctcggccacaaggatggcttcggcttcctg
cgtccggatgggggtgggcaggatctctatctgaacaaccgcgagatgcagcgcctgatg
cacggggactatgccctggtgcagccgaccgagatcgaccgcaaggggcgccaggaggcg
cgtctggtgcgcgtgctcaaggcgcgcgagatggatatcgtcgggcgctacttcgtcgag
aacggggtagggtttgtggtgccggacgacagccgcatcggccaggacatcctgatcccg
gaaagggagaacaagggggcgcgccagagccaggtggtggtggtgcgtctgacccagcgt
ccgaccggccgcctcaacgccctcggcaccgtgctcgaggtgcttggcgagaacatggcg
ccgggcatggagatcgagatcgccctgcgcaaccacggcatcccccatacctggccggag
gcggtcacccaggagatcgtcaacctcaccgacgaggtgcccgagaaggccaagttgggc
cgggtcgacctgcgtaccctgccccttgtcaccatcgacggggaagatgcccgcgacttt
gacgacgccgtcttctgcgagaagaaaaaatccggcggctggcgcctctgggtcgccatc
gccgacgtctcggcctatgtgaagccgggcaccgccctggatgccgaggcctatcagcgc
ggcaactcggtctacttccccgagttcgtggtgcccatgctgcccgaggtgctctccaac
ggcctctgctccctcaacccgcaggtggatcgcctctgcatggtgtgcgagatgaccatc
tccgccagcggtcgcatgtccggctacaccttctacgaggcggtgatgaactcccacgcc
cggatgacctacaccaaggtggcggccattctggacggggatcccaagctgcgtcagcag
tacgagccgctggtgggtcacctcgaggagctgagccacctctacaaggcgctcaagcac
gcccgccacctgcgcggtgccgtggagttcgagagcgaagagacccgcttcatcttcaac
gccgagcgcaagatcgaccgcatcgtgcccctggtgcgcaacgacgcccacaagatcatc
gaagagtgcatgatccaggcgaacgtggccgccgcccgcttcatcgagaagcacgaggcc
gccgccctgttccgggtgcacgaccgtccgggcgaagagcgcctgaccggtttccgccag
ttcctcgccgagctgggactggagctcaagggggggctcgagcccgagccgcgcgacttc
gccgagctggccgacaagttcgaggggcgcccggatgcggagctgctctccaccatgctg
ctgcgctccatgcgtcaggccatctatcaggccgacaacataggtcacttcggcctggcc
ctgaagtcctacgcccacttcacctcgccgatccgccgctatccggacctgatcctgcac
cgggccatcaagtaccagctggccaaggcccagggcaatccccgccacaagtggaccccg
agcggtggctatcactacagccaggacgagatggaccccatgggggagcactgctccctg
accgagcgccgtgccgacgatgccacccgcgacgtggccgactggctcaagtgcgagtac
atgcaggaccacgtgggtgacgagttcgacggcgtcatcgccagcgtcaccggctttggc
ttcttcgtgcgtctggccgagatccacatcgacggcctggtccacgtcagcaccctgacc
aacgactactaccagttcgaccccattcaccagcagctgatcggcgagaacttccgccgc
cgctaccgcctcggtgacaaggtgcgggtcaaggtgatgggggtgagcctggacgatcgc
aagatcgacttcgtgatggtcgaggagcccctcaagatgaccggcaagggcgccaagcag
gcggtgcgcaagatggccgacatcaagaaagagaaggccaagaccgagcgtcgccgcgac
aagcgcaaggccgagggcaaggagaagaagagcggtggcagcgccaagccgagcaatcgc
cgccccggcaagcgcgcccgcgacaaggccaaggggtaa
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