Actinobacillus suis ATCC 33415: ASU1_03420
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Entry
ASU1_03420 CDS
T03246
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ass
Actinobacillus suis ATCC 33415
Pathway
ass03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ass00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ASU1_03420 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ass03400
]
ASU1_03420 (sbcB)
Enzymes [BR:
ass01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ASU1_03420 (sbcB)
DNA repair and recombination proteins [BR:
ass03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ASU1_03420 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ASU1_03420 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ASU1_03420 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
zf-C2H2_ZNF462_11
RLL
Motif
Other DBs
NCBI-ProteinID:
AIJ30956
LinkDB
All DBs
Position
743765..745309
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AA seq
514 aa
AA seq
DB search
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV
MVTGITPQQCNAEGVSEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY
EYSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAM
ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGDMTPLVHVSGMFGNARGNTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVSLKGVHI
NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERRFESSAN
VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA
EQIKWQKYCHQQIDAKSAQFAEAIDNLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
DNAQNEQLVSALNQVVEQGMDKAAKLEMLKALIK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaatcttacttttttcttttatgattacgaaagtttcggtgtgagtccggcg
ttagatcgtccggcacagtttgccggtattcgtaccgatagtgattttaatatcatcggt
gagccggtgatgttctattgtaagcaaacaccggattatttaccctcgcccgaagcggtg
atggtaaccggtatcactccgcaacagtgtaacgctgaaggcgtgtcagaaccggaattt
gctgcacgtattcacgctgaattcagccaaccgaacacttgtattttaggctataacaat
attcgttatgatgatgaaatgacccgttatacctttttccgcaatttctttgacccgtat
gaatatagttggaaaaacggcaattcacgttgggatctgttagatcttgttcgagcttgt
tatgcactgcgtccggatggtattgaatgggtaacggacgaaaacggtgtgccgaatttc
aaattagagaatctcaccaaagcgaacggcattgctcatgaaaatgcgcacgatgcaatg
gcggacgtttacgccacgattgcgatggcgaaattgattaagcaaaaacagccgaaactt
ttccaatttttctttgaaaatcgtggtaagaaagaaattgagaaaatgattgataccggt
gatatgactccgttggtacacgtttccggtatgtttggcaacgcacgaggcaatactgct
tggattgcaccgattgcgtggcatccgaccaatcaaaatcaagtgttatgctgcgatcta
tcgggcgatgttagtgccttattaacggattcggcagaagaattacgtactcgtttatac
actaaaaaagaagagttagctgaaggtgttgcacccgtgtcattaaaaggcgtgcatatc
aaccgctgtccgattattgcgccggcaaaagtgttgttgcctgaaaatgcggctcgctta
ggcattgatcgtgagcgttgcttggaaaatctcaaattactgaaagcaaataaaagttta
gtacgtgagaaagtaactgaaatttttatggaagaacgtcgtttcgagtcttctgcgaat
gtggaaaccacgttatatgacggtttcttctcgccggcggataaaaataatatggcgatt
ttacgtactttaccgccgcaagaattggcgcatcacggcttacagtttgctgatgaacga
gtagaagctttactattccactatcgtgctagacattatcccgaaacattgagccgagcg
gaacagattaaatggcagaaatattgccatcagcagatagatgccaaatcggcacaattt
gccgaagcgattgataacttattccaaattcatcacgataatccggaaaaggtaaaatta
ttggaaaatttgaccgcttacgctgcacaaattgcggaatttcaggtagttaaacacacc
gataatgcgcaaaatgaacagttggtttcagccttaaatcaagtggtggaacagggtatg
gataaagcggcgaagttggaaatgctaaaggcattaattaaataa
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