Actinobacillus suis ATCC 33415: ASU1_03940
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Entry
ASU1_03940 CDS
T03246
Name
(GenBank) cold-shock DEAD box protein A-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ass
Actinobacillus suis ATCC 33415
Pathway
ass03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ass00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASU1_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ass03019
]
ASU1_03940
03009 Ribosome biogenesis [BR:
ass03009
]
ASU1_03940
Enzymes [BR:
ass01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASU1_03940
Messenger RNA biogenesis [BR:
ass03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASU1_03940
Ribosome biogenesis [BR:
ass03009
]
Prokaryotic type
rRNA helicases
ASU1_03940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIJ31059
LinkDB
All DBs
Position
876038..877897
Genome browser
AA seq
619 aa
AA seq
DB search
MTTNSLTFADLGLPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPAQRHPQMLVMAPTRELAIQVADACEQFTKNMKGVRVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPEN
HQTALFSATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLEKLKSGRLDILV
ATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
EHLMKKPIDEVAIPNHEILMEKRREKFKARVSAQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMMLQEKQKLILPPDPEIRAARSERGRRDRDDRRGGRDERRGGREHRENNGVAMDL
YRIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQK
ARVLNKQMQMSLLGPAGGVNSQPFEERRGGGRRSDRNDRNDRRGDRGGRSDRREGGFNDR
KKGGFKEKRFNDRGRGRRD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacaactaattctttaactttcgcagacttaggtcttccacaatcaattcttgacgca
gtaaatgaaatcggctttgtaaacccatcgccaattcaacaagaaactatccctcattta
ttagctggccgtgacgtacttggtatggcgcaaaccggtagtggtaaaacagcggcattc
tctttaccgttacttgcacaaattgatccggcacaacgccacccgcaaatgttagtgatg
gcaccaactcgtgaattagcaatccaagtagcagatgcgtgcgaacaatttactaaaaat
atgaaaggcgtgcgtgttgtaaccgtttacggtggtcaacgttatgacattcaattacgc
gcattaaaacaaggttcacaagttgttgttggtactccgggtcgtattcttgatcatatt
cgtcgtggtacattagatctatctgcgcttcaatctatcgtattagatgaagcggatgaa
atgcttcgtatgggctttattgacgacgttgaaaccgtgatggcggaattaccggaaaat
caccaaacagcattattctctgcaacgatgcctgaaccgattcgtcgtattacccgtcgc
tttatgaaagatccgcaagaagttaaaattcaagcgactcaacgttctgcaccagatatc
acgcaaagctactggttagtaaatggcttccgtaaaaatgatgcgttactacgtttctta
gaagtagaagaatttgatgcggcaattatctttactcgtaccaaaaccggcacaattgat
attaccgaattatgtgaacgtaacggctaccgtgcggcggcattaaacggtgatatgacc
cagcaagcacgtgagcaaacgttagaaaaattaaaatcaggtcgtttagatatcttagta
gcaaccgacgtggcagctcgtggtatcgatatcgaacgtatcagccttgtagtgaacttt
gatattccattagatgcggaatcttatgttcaccgtatcggtcgtaccggtcgtgcaggt
cgttctggtcgtgcattattattcgtagaacctcgtgagcgccgtttacttcgtaatatc
gaacatttaatgaaaaaaccgatcgatgaagttgcgattccaaatcatgagattctaatg
gaaaaacgtcgcgagaaattcaaagcacgtgtttcagcacagttagaacaccacgattta
gagaaataccgtgaactacttgaagatttattcacagccgaccaagaccacgaggaattg
gcagcggcaatgatgatgatgcttcaagagaaacaaaaattaattcttccgccggatccg
gaaattcgtgcagcacgtagcgaacgtggtcgcagagaccgtgacgatcgtcgtggagga
cgtgatgagcgccgtggcggccgtgaacaccgtgaaaataacggtgtggcaatggattta
tatcgtatcgaattaggtcgtgaagacggtgtggaagtacgtcatatcgtaggcgctatc
gctaacgaaggtgatattagcagccgttatatcggtcacattaaattacacgatacttac
tctacgattgagttaccacaaggtatgccgaaccacatcgtgcaacactttgcgcagaaa
gcacgtgtattaaacaaacagatgcaaatgtctttgttaggtcctgccggtggtgtaaac
agccaaccgtttgaagaacgccgtggtggtggtcgtcgtagcgatagaaatgatcgcaat
gaccgccgtggagatcgtggtggccgttctgaccgtcgtgaaggtggctttaacgaccgt
aagaaaggcggttttaaagaaaaacgtttcaatgacagaggtcgtggtcgtcgtgactaa
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