Actinobacillus suis ATCC 33415: ASU1_09830
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Entry
ASU1_09830 CDS
T03246
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ass
Actinobacillus suis ATCC 33415
Pathway
ass03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ass00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ASU1_09830 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ass03021
]
ASU1_09830 (rpoB)
03400 DNA repair and recombination proteins [BR:
ass03400
]
ASU1_09830 (rpoB)
Enzymes [BR:
ass01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ASU1_09830 (rpoB)
Transcription machinery [BR:
ass03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ASU1_09830 (rpoB)
DNA repair and recombination proteins [BR:
ass03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ASU1_09830 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AIJ32221
LinkDB
All DBs
Position
2150305..2154333
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIERDSDGQQGLEAAFRSVFPIV
SNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILTMFFDKITFEIQDNKLLMT
LVPERLRGETAQFDIEANGKVYIEKGRRITARHIRTLEKDDIKQIEVPVEYIVGKVAAKD
YVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETLRVDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLDIPEGVGSGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVT
EDIEYLSAIEEGNYVIAQANSNLDEEFRFTDTYVTCRGEHGESGLYKPEDIHYMDISTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAK
RGGTIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGEPVAR
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLKEAKKD
LTEELEILEAGLFTRVRNLLVEGGVSEAELDKVSREKWLEQTLDDEAKQNQLEQLAEQHE
ELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVRRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINKMIKQQQEVA
KLREYIQKAYDLGHGSQVVDLSTFTDEEVMRLAENLRKGLPLATPVFDGAHEAEIKGLLE
LGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHQMEPGMP
ESFNVLLKEIRALGIDMELDED
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcatattccgagaaaaagcgtattcgtaagagctttggtaagcgtccacag
gttcttaacgtaccttatctattaacaattcagcttgattcttttgaaaaatttattgaa
agagattcagatggacaacaaggtttagaagcggcattccgttcagtgttccctattgtg
agcaacaatggtgcaactgaattacaatacgtttcttacgaattaggtgagccggtattt
gacgttcgtgaatgtcaaattcgtggtacaacctatgcagcgccattacgcgtaaaatta
cgtttagtgacttttgatcgtgaagcggcagcaggcacggtaaaagacattaaagaacaa
aacgtgtatatgggcgaaatcccattaatgaccgacaacggtactttcgttatcaacggt
actgagcgtgtaatcgtatctcagttacaccgtagtccgggcgtattcttcgattctgac
aaaggtaaaacccactcatcaggtaaagtgctttataacgcacgtattattccttaccgt
ggttcttggttagactttgaatttgatccgaaagacaacctttacgcgcgtatcgaccgt
cgtcgtaaattacctgcaacaatcattctacgtgcattaggttacactactgaagaaatc
ttaacgatgttcttcgataaaattacgttcgaaatccaagataataaacttttaatgaca
ttggtacctgagcgtttacgtggtgaaacagcacaatttgatattgaagccaacggcaaa
gtttatattgaaaaaggtcgtcgtatcaccgcacgtcatatccgtactttagaaaaagac
gatattaaacaaattgaagtgccggtagagtacattgtgggcaaagtagcagcgaaagat
tatgttgatctttcaacaggcgaattagtttgcccagcaaacatggaaatctcaatggag
atgttagcgaagttatcgcaagcaggctacaaagagatcgaagtactcttcacaaacgat
ttagaccatggtccgtatatttcagaaacattacgtgtagatccaacttatgaccgctta
agtgcattagttgaaatttatcgtatgatgcgtccgggcgagccgccaacaaaagaagca
gcggaagcgttattcgataatatgttcttctcggcagatcgttatgatttatctgcggta
ggtcgtatgaaattcaaccgctcacttgatattccggaaggtgtaggttcaggtatttta
agcaacgatgacatcatcggtgtaatgaaaaaactgatcgagatccgtaacggtcgcggt
gaagtagacgatatcgaccacttaggtaaccgtcgtatccgttctgtaggtgaaatggca
gaaaaccaattccgtattggtttagtgcgtgtggaacgtgcagtgcgtgaacgtttatca
ttaggtgacctagacggtattactccgcaagatttaatcaatgcgaaaccaatttctgcg
gcagtgaaagaattcttcggttcttcacaactttcgcaatttatggaccaaaataacccg
ctttcagaggttacacacaaacgtcgtatttcggcattaggtccgggcggtttaacacgt
gaacgtgcaggctttgaggttcgagacgtacacccgactcactatggtcgcttatgtcca
atcgaaaccccagagggtccaaacatcggtttgatcaactcactttcggtatatgcacgt
actaataactacggtttcttagaaacgccattccgtaaagtagtgaacggtcaagtaacc
gaagatatcgagtatttatcggcaatcgaagaaggtaactacgttatcgctcaggcgaac
tcaaacttagatgaagagttccgtttcactgatacatacgtaacttgtcgtggtgaacac
ggtgagtcaggtttatacaaaccagaagatattcactatatggatatctcaacacaacaa
gttgtttctgttgcggcagcgttaattccgttccttgagcacgacgatgcgaaccgtgcg
ttaatgggtgcgaacatgcaacgtcaggcagttcctacattacgtgcggataaacctctt
gttggtaccggtatggaaaaaccaatcgcacttgactcaggtgttgcgattgtggcgaaa
cgtggtggtactatccaatacgttgacgcatctcgtatcgtagtgaaagtaaacgaagat
gaaacgattccgggcgaagcaggtatcgacatctataacttaattaaatacacccgttca
aaccaaaatacctgtatcaaccaaattccttgtgtgaatttaggtgagccggtagcacgt
ggtgagatcttagcggacggtccttcaacagacttaggtgagttagcattaggtcaaaac
attcgtgtggcattcatgccatggaatggttataacttcgaagactcaatgttagtttct
gagcgtgtggtacaagaagaccgtttcacgacaatccacattcaagaattatcttgtgtg
gcacgtgataccaaacttggtgcagaagaaatcactgcggatattccaaacgtaggtgaa
tcagcattaagcaaacttgatgaatcaggtatcgtgtacgttggtgcggaagttaagggt
ggcgacatcttagtaggtaaagtaacgcctaaaggtgaaacccaattaacaccggaagaa
aaacttttacgtgcaatcttcggtgagaaagcatctgacgttaaagattcttcattacgt
gtaccaaacggtacttcaggtacggttattgacgttcaagtatttactcgtgatggcgtt
gaaaaagataaacgtgcattagaaatcgaggaaatgcagcttaaagaagcgaagaaagat
ttaactgaagagttagaaattttagaagccggcttattcacacgtgttcgcaacttatta
gttgaaggtggcgtatctgaagctgaattagataaagtttctcgtgagaaatggttagaa
caaaccttagatgacgaagcgaaacaaaatcaattagaacagcttgcggaacaacacgaa
gaattacgtaaagagttcgaacgtaaacttgaaattaaacgcaacaagatcattcaaggt
gacgatttagcaccgggcgtgttaaaagttgttaaagtttacttagcggttcgtcgtcaa
atccaaccgggtgataaaatggcgggtcgtcacggtaacaaaggtgttatctcgaaaatc
aacccagttgaagatatgccgtacgatgaaaacggccaaccggttgagatcgtattgaac
ccgctgggcgtaccttcacgtatgaacatcggtcagatcttagaaacacacttaggttta
gcggcgaaaggtatcggtgatcagattaataagatgatcaaacagcaacaagaagtggct
aaattacgtgaatatatccagaaagcgtacgatttaggtcacggttcacaagttgttgat
ttaagtacctttactgatgaagaagtaatgcgtttagcagaaaatttacgtaaaggttta
ccacttgcaacaccagtatttgatggtgcgcacgaagctgaaatcaaaggcttattagaa
ttaggcggcttaccgacttcaggtcagattacattatttgacggtcgtaccggtgagaaa
ttcgagcgtcctgtaaccgtaggttatatgtatatgctcaaattgaaccacttagttgac
gacaaaatgcacgcgcgttcaacaggttcttatagtcttgttactcagcaaccacttggt
ggtaaagcgcagttcggtggtcagcgtttcggtgagatggaggtttgggcattagaagca
tacggtgctgcttacaccttacaagaaatgttaacggttaaatcggatgacgtaaacggt
cgtacgaagatgtataaaaacatcgtagacggcacacaccaaatggaaccgggtatgccg
gaatcattcaacgtattgttgaaagagattcgtgccttaggtatcgatatggagttagac
gaagactag
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integrated database retrieval system
