Actinobacillus suis ATCC 33415: ASU1_10505
Help
Entry
ASU1_10505 CDS
T03246
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ass
Actinobacillus suis ATCC 33415
Pathway
ass03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ass00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASU1_10505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ass03019
]
ASU1_10505
03009 Ribosome biogenesis [BR:
ass03009
]
ASU1_10505
Enzymes [BR:
ass01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ASU1_10505
Messenger RNA biogenesis [BR:
ass03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASU1_10505
Ribosome biogenesis [BR:
ass03009
]
Prokaryotic type
rRNA processing factors
ASU1_10505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
AIJ32356
LinkDB
All DBs
Position
2310370..2313435
Genome browser
AA seq
1021 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKA
KNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIREATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIAL
SILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESMETP
HFSVYRLRENEVLPTLSYDLAKHYHAREEDTQPNTHTVSEEALVTRNEPVITVESVLQSS
ELNLQPAPTPVAPAKPSLLSRLIAKVKSLFATEEKVEEKPKPKARNQRERRNRRERPNRA
ERQERKQQQQDEQKAQRQERNQERAESKKARRQVVEEVAGAPETQTEQAQRPQRENQVAE
RRQRRDLRKKVRVEANDNNAIEANQAAVNPVVAKAAPEKAVAEAKPQAFVSPEVISAVTE
SKPSDESVKAAVQDSSSDVVAEERTEQRENNRQRRLPRHLRVGNQRRRENNRREHSAVAA
MPLAAAVASLEMASGKIWVKFSNQPVATKAAPKVEEKPRFLSVDEMLEQQQEPEVVPTAP
TVEKSVNSAAPFGAFVTQHSDRDLVKENKERAQHIVSDEPKEDAQLVEKAMAKHVAPLGG
FVSQHTDRDLVKEKNERVQKHQAQATSAPALESVSTEEIVAPVSSYESSYSFSGHLGTFS
RVQHTKAAMTVASAPAEMPAEANVTEWTQSKYYFHGKGFGGHSSAVSHVHSAPRIAGAEV
E
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaaaaagaagagttgcgcgttgcactcgttgac
gggcaacgtttattcgatttagatatcgaaagcccgggacacgaacaaaaaaaatcaaat
atctacaaagggaaaattacccgtgttgaaccaagccttgaagctgcattcgttgattat
ggtgcagagcgtcatggtttccttcctttaaaagaaatctctcgtgaatacttccctgcg
gattatgtattcaacggtcgcccgaatatcaaagatattatcaaagaaggacaagaagtg
attgtccaagtgagtaaagaagaacgtggtaacaaaggtgctgcgctgacgacttttatc
tcacttgccggtagctatttagtattaatgccgaataacccgcgtgcaggcggtatttct
cgccgtattgaaggtgatgaacgcttagaattaaaagaagcgttagattgcttagatgtg
ccggaagacgttggtttaatcgtgcgtaccgccggtgtaggcaagtcaccggaagagctt
caatgggacttaaaagtgcttttacaccattgggaagcgatcaaaaaagcggcggaatct
cgtccggctccattccttatccatcaagaaagtgacgtgattgttcgtgcgatccgtgat
tatcttcgtcgcgatatcggcgaaattttaattgataacaaaaaaatcttcgaaaaagcg
aaaaaccatattcgtttagtgcgtccagatttcatcaatcgtgtgcgtttatatgaaggt
gaagtaccgttattcagccattatcaaatcgaatcacaaatcgaatcggcgttccaacgt
gaagtgcgtttaccgtcaggtggttcaatcgttattgacgtaaccgaagcgttaacggcg
attgatattaactcatcacgctcaacccgtggcggcgatatcgaagaaaccgcactaaat
accaacttagaagcggcggatgaaattgcacgtcaattacgtttacgtgacttaggcggt
ttgattgtaatcgattttattgatatgaccccggtgcgtcatcaacgcgaagtagaaaac
cgtatccgtgaagcgacacgccaagaccgcgcgcgtattcaattcggtcgtatttcacgt
tttggcttgttagaaatgagccgtcagcgtttaagtccgtcactaagcgaagcatcaagc
catgtatgtcctcgctgccaaggtacgggtaaagtgcgtgataacgaatcgattgcactt
tcgattttacgtttattagaagaagaggcgatcaaagaaaataccgcccaagttcatact
attgtgccggtgcaaattgcgtcttacttactcaatgaaaaacgtaaagcgatctcaagt
attgaaaaacgccatgatgtacaagtggtggttgtgccgacagaaagcatggaaaccccg
catttcagcgtatatcgtttacgtgaaaatgaagtgttaccaacacttagctacgattta
gcgaagcactaccatgctcgtgaagaagatactcaaccgaatacacatacagtttcggaa
gaagcgttagtgacacgtaatgaaccggtgattaccgtagaatcagtgttacaaagttct
gagttaaatcttcaacctgcaccgacaccggtagcaccggcaaaaccttcactcctaagt
cgcttaattgcaaaagtgaaaagcttatttgcaacggaagaaaaagttgaagaaaaaccg
aagccgaaggctcgtaaccaacgtgagcgccgtaaccgtcgtgagcgtccaaatcgtgca
gaacgccaagagcgtaaacagcaacaacaagacgagcaaaaggcacagcgtcaggaacgt
aaccaagagcgtgcggaatcgaagaaagctcgccgccaagtggttgaagaagttgcaggc
gctccagaaactcaaacggaacaagcacaacgtccgcaacgtgaaaatcaagtagcggaa
cgccgccaacgtcgtgacttacgtaaaaaagtacgtgttgaagcgaatgacaacaacgct
attgaagcaaaccaagcagcggtaaatccggttgtagcaaaagctgctcctgaaaaagcc
gtagcggaagcgaagcctcaagcatttgtgagtccggaagtgatttcagctgtaacggag
agcaaaccgtcagacgaaagtgtgaaagctgctgtgcaagacagcagttcggatgttgtt
gcggaagaacgtacggagcagcgtgaaaataatcgccaacgtcgtttacctcgtcattta
cgtgtgggtaatcagcgtcgccgtgaaaataaccgccgtgaacattctgcggtagcagca
atgcctttagctgcagcggttgcttctctggaaatggcaagcggtaagatttgggtgaaa
tttagcaaccaaccagtggctacaaaagctgcaccgaaggtagaagagaaaccgcgtttc
ttatctgtagatgaaatgttagagcaacaacaagagccggaagttgtaccaacagcgcca
accgttgagaaaagcgtgaactctgcagcaccttttggcgcttttgttacccagcattct
gatcgtgatttagtgaaagaaaacaaagaacgtgcgcagcatattgtatctgatgagccg
aaagaagatgcgcagttggtggaaaaagcaatggcaaaacacgttgcgccactaggtggt
tttgtttctcaacatactgatcgtgatttagtaaaagagaaaaatgaacgtgtacagaaa
caccaagcgcaagcaacttctgcaccggcacttgaaagtgtaagcacagaagagattgtt
gctccggtatcaagctatgaaagtagctatagtttctctggtcatttaggtacattctct
cgtgtacaacatacaaaagctgcgatgacggtggcatcagcaccggcagaaatgcctgcc
gaagcaaatgtcacggagtggactcagtcaaaatattacttccatggtaaaggttttggt
ggtcattccagtgcggtaagccatgtacattcagcaccacgtattgcaggtgcagaagtg
gaataa
DBGET
integrated database retrieval system
